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2FMM
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EMSY-HP1 COMPLEX
Authors
:
Y. Huang
Date
:
09 Jan 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Ent Domain, Chromo Shadow Domain, Emsy Protein, Heterochromatin Protein 1, Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Huang, M. P. Myers, R. M. Xu
Crystal Structure Of The Hp1-Emsy Complex Reveals An Unusua Mode Of Hp1 Binding.
Structure V. 14 703 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:155 , CYS A:156 , PRO A:157 , GLN A:158 , VAL A:159 , HOH A:621 , HOH A:626 , HOH A:665 , HOH A:666 , HOH A:669
BINDING SITE FOR RESIDUE SO4 A 601
2
AC2
SOFTWARE
HOH C:674 , LYS D:155 , CYS D:156 , PRO D:157 , GLN D:158 , VAL D:159 , HOH D:633 , HOH D:634 , HOH D:635 , HOH D:652
BINDING SITE FOR RESIDUE SO4 D 602
3
AC3
SOFTWARE
LYS C:155 , CYS C:156 , PRO C:157 , GLN C:158 , VAL C:159 , HOH C:678
BINDING SITE FOR RESIDUE SO4 C 603
4
AC4
SOFTWARE
LYS B:155 , CYS B:156 , PRO B:157 , GLN B:158 , VAL B:159 , HOH B:635
BINDING SITE FOR RESIDUE SO4 B 604
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: ENT (E:16-100)
2: CHROMO_2 (-|A:117-175,B:117-175,C:117-175,D:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENT
PS51138
EMSY N-terminal (ENT) domain profile.
EMSY_HUMAN
16-100
1
E:16-100
2
CHROMO_2
PS50013
Chromo and chromo shadow domain profile.
CBX1_HUMAN
21-79
117-175
4
-
A:117-175
B:117-175
C:117-175
D:117-175
[
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Exons
(6, 12)
Info
All Exons
Exon 1.2a (E:7-24)
Exon 1.3 (E:24-57)
Exon 1.4a (E:57-82)
Exon 1.6b (E:82-124)
Exon 2.7b (A:108-138 | B:109-138 | C:109-138 ...)
Exon 2.8c (A:138-175 | B:138-175 | C:138-175 ...)
View:
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All Exon Boundaries
1: Boundary 1.1c/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4a
4: Boundary 1.4a/1.6b
5: Boundary 1.6b/1.6e
6: Boundary 2.6a/2.7b
7: Boundary 2.7b/2.8c
8: Boundary 2.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000334736
1c
ENSE00001386178
chr11:
76156069-76156172
104
EMSY_HUMAN
-
0
0
-
-
1.2a
ENST00000334736
2a
ENSE00002183521
chr11:
76157944-76158052
109
EMSY_HUMAN
1-24
24
1
E:7-24
18
1.3
ENST00000334736
3
ENSE00001223548
chr11:
76162902-76163001
100
EMSY_HUMAN
24-57
34
1
E:24-57
34
1.4a
ENST00000334736
4a
ENSE00002152029
chr11:
76164358-76164432
75
EMSY_HUMAN
57-82
26
1
E:57-82
26
1.6b
ENST00000334736
6b
ENSE00001696572
chr11:
76169227-76169402
176
EMSY_HUMAN
82-141
60
1
E:82-124
43
1.6e
ENST00000334736
6e
ENSE00001102458
chr11:
76170980-76171129
150
EMSY_HUMAN
141-191
51
0
-
-
1.7
ENST00000334736
7
ENSE00001697568
chr11:
76174865-76175124
260
EMSY_HUMAN
191-277
87
0
-
-
1.8
ENST00000334736
8
ENSE00001718146
chr11:
76183608-76183884
277
EMSY_HUMAN
278-370
93
0
-
-
1.9a
ENST00000334736
9a
ENSE00001152940
chr11:
76207259-76207513
255
EMSY_HUMAN
370-455
86
0
-
-
1.10a
ENST00000334736
10a
ENSE00001102425
chr11:
76224430-76224579
150
EMSY_HUMAN
455-505
51
0
-
-
1.11b
ENST00000334736
11b
ENSE00001102392
chr11:
76227186-76227356
171
EMSY_HUMAN
505-562
58
0
-
-
1.12
ENST00000334736
12
ENSE00001102435
chr11:
76234199-76234335
137
EMSY_HUMAN
562-607
46
0
-
-
1.13a
ENST00000334736
13a
ENSE00001102384
chr11:
76237506-76237679
174
EMSY_HUMAN
608-665
58
0
-
-
1.14
ENST00000334736
14
ENSE00001102400
chr11:
76239312-76239510
199
EMSY_HUMAN
666-732
67
0
-
-
1.15
ENST00000334736
15
ENSE00001152902
chr11:
76246939-76247103
165
EMSY_HUMAN
732-787
56
0
-
-
1.16
ENST00000334736
16
ENSE00001102418
chr11:
76248839-76248994
156
EMSY_HUMAN
787-839
53
0
-
-
1.17
ENST00000334736
17
ENSE00001152894
chr11:
76250643-76250684
42
EMSY_HUMAN
839-853
15
0
-
-
1.18c
ENST00000334736
18c
ENSE00001152887
chr11:
76253260-76253411
152
EMSY_HUMAN
853-903
51
0
-
-
1.19c
ENST00000334736
19c
ENSE00001040003
chr11:
76255303-76255866
564
EMSY_HUMAN
904-1091
188
0
-
-
1.20a
ENST00000334736
20a
ENSE00001040001
chr11:
76256841-76257341
501
EMSY_HUMAN
1092-1258
167
0
-
-
1.22f
ENST00000334736
22f
ENSE00001403769
chr11:
76260996-76262586
1591
EMSY_HUMAN
1259-1322
64
0
-
-
2.2
ENST00000393408
2
ENSE00001515177
chr17:
46178560-46178117
444
CBX1_HUMAN
-
0
0
-
-
2.5
ENST00000393408
5
ENSE00002178956
chr17:
46154403-46154227
177
CBX1_HUMAN
1-47
47
0
-
-
2.6a
ENST00000393408
6a
ENSE00000735652
chr17:
46153540-46153363
178
CBX1_HUMAN
47-106
60
0
-
-
2.7b
ENST00000393408
7b
ENSE00000735651
chr17:
46152462-46152368
95
CBX1_HUMAN
107-138
32
4
A:108-138
B:109-138
C:109-138
D:110-138
31
30
30
29
2.8c
ENST00000393408
8c
ENSE00001824299
chr17:
46148941-46147414
1528
CBX1_HUMAN
138-185
48
4
A:138-175
B:138-175
C:138-175
D:138-175
38
38
38
38
[
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SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d2fmme1 (E:9-124)
2a: SCOP_d2fmma_ (A:)
2b: SCOP_d2fmmb_ (B:)
2c: SCOP_d2fmmc_ (C:)
2d: SCOP_d2fmmd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
ENT-like
(3)
Superfamily
:
ENT-like
(3)
Family
:
Emsy N terminal (ENT) domain-like
(3)
Protein domain
:
Emsy
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2fmme1
E:9-124
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Chromo domain-like
(82)
Family
:
Chromo domain
(41)
Protein domain
:
Heterochromatin protein 1, HP1
(11)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2fmma_
A:
2b
d2fmmb_
B:
2c
d2fmmc_
C:
2d
d2fmmd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2fmmD00 (D:110-175)
1b: CATH_2fmmB00 (B:109-175)
1c: CATH_2fmmC00 (C:109-175)
1d: CATH_2fmmA00 (A:108-175)
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Topologies
(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Human (Homo sapiens)
(86)
1a
2fmmD00
D:110-175
1b
2fmmB00
B:109-175
1c
2fmmC00
C:109-175
1d
2fmmA00
A:108-175
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Pfam Domains
(0, 0)
Info
all PFAM domains
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