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2FK0
Biol. Unit 2
Info
Asym.Unit (725 KB)
Biol.Unit 1 (240 KB)
Biol.Unit 2 (240 KB)
Biol.Unit 3 (246 KB)
Biol.Unit 4 (246 KB)
Biol.Unit 5 (241 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A H5N1 INFLUENZA VIRUS HEMAGGLUTININ.
Authors
:
J. Stevens, I. A. Wilson
Date
:
03 Jan 06 (Deposition) - 02 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N (3x)
Biol. Unit 4: O,P (3x)
Biol. Unit 5: Q,R (3x)
Keywords
:
Glycoprotein, Membrane-Fusion Precursor, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Stevens, O. Blixt, T. M. Tumpey, J. K. Taubenberger, J. C. Paulson, I. A. Wilson
Structure And Receptor Specificity Of The Hemagglutinin Fro An H5N1 Influenza Virus.
Science V. 312 404 2006
[
close entry info
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
2ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
2ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
2ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
2af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(15, 15)
Info
All Sites
01: AC4 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
NAG A:3 , BMA A:5 , ASN A:240 , ASN K:172
BINDING SITE FOR RESIDUE NAG A 4
02
BC3
SOFTWARE
NAG E:4 , ASN E:169 , ASN E:240 , LYS I:259
BINDING SITE FOR RESIDUE NAG E 3
03
BC6
SOFTWARE
NAG G:2 , GLN G:24 , ASN G:34 , ARG G:313
BINDING SITE FOR RESIDUE NAG G 1
04
BC7
SOFTWARE
NAG G:1
BINDING SITE FOR RESIDUE NAG G 2
05
BC8
SOFTWARE
NAG G:4 , ASN G:169 , ASN G:240 , SER I:221
BINDING SITE FOR RESIDUE NAG G 3
06
BC9
SOFTWARE
NAG G:3 , BMA G:5 , ASN G:240
BINDING SITE FOR RESIDUE NAG G 4
07
CC1
SOFTWARE
NAG G:4
BINDING SITE FOR RESIDUE BMA G 5
08
CC2
SOFTWARE
NAG I:2 , GLN I:24 , ASN I:34 , ARG I:313
BINDING SITE FOR RESIDUE NAG I 1
09
CC3
SOFTWARE
NAG I:1
BINDING SITE FOR RESIDUE NAG I 2
10
CC4
SOFTWARE
NAG I:4 , ASN I:169 , ASN I:240
BINDING SITE FOR RESIDUE NAG I 3
11
CC5
SOFTWARE
NAG I:3 , ASN I:240
BINDING SITE FOR RESIDUE NAG I 4
12
CC6
SOFTWARE
NAG K:2 , GLN K:24 , ASN K:34 , ARG K:313
BINDING SITE FOR RESIDUE NAG K 1
13
CC7
SOFTWARE
NAG K:1
BINDING SITE FOR RESIDUE NAG K 2
14
CC8
SOFTWARE
SER G:221 , NAG K:4 , ASN K:169 , ASN K:240
BINDING SITE FOR RESIDUE NAG K 3
15
CC9
SOFTWARE
NAG K:3 , ASN K:240
BINDING SITE FOR RESIDUE NAG K 4
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 18)
Info
All SCOP Domains
1a: SCOP_d2fk0c_ (C:)
1b: SCOP_d2fk0e_ (E:)
1c: SCOP_d2fk0g_ (G:)
1d: SCOP_d2fk0i_ (I:)
1e: SCOP_d2fk0k_ (K:)
1f: SCOP_d2fk0m_ (M:)
1g: SCOP_d2fk0o_ (O:)
1h: SCOP_d2fk0q_ (Q:)
2a: SCOP_d2fk0a1 (A:11-324)
3a: SCOP_d2fk0b1 (B:1-175)
3b: SCOP_d2fk0d_ (D:)
3c: SCOP_d2fk0f_ (F:)
3d: SCOP_d2fk0h_ (H:)
3e: SCOP_d2fk0j_ (J:)
3f: SCOP_d2fk0l_ (L:)
3g: SCOP_d2fk0n_ (N:)
3h: SCOP_d2fk0p_ (P:)
3i: SCOP_d2fk0r_ (R:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
automated matches
(43)
Influenza a virus (a/viet nam/1203/2004(h5n1)) [TaxId: 284218]
(1)
1a
d2fk0c_
C:
1b
d2fk0e_
E:
1c
d2fk0g_
G:
1d
d2fk0i_
I:
1e
d2fk0k_
K:
1f
d2fk0m_
M:
1g
d2fk0o_
O:
1h
d2fk0q_
Q:
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
2a
d2fk0a1
A:11-324
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
3a
d2fk0b1
B:1-175
3b
d2fk0d_
D:
3c
d2fk0f_
F:
3d
d2fk0h_
H:
3e
d2fk0j_
J:
3f
d2fk0l_
L:
3g
d2fk0n_
N:
3h
d2fk0p_
P:
3i
d2fk0r_
R:
[
close SCOP info
]
CATH Domains
(3, 27)
Info
all CATH domains
1a: CATH_2fk0A02 (A:57-272)
1b: CATH_2fk0C02 (C:57-272)
1c: CATH_2fk0E02 (E:57-272)
1d: CATH_2fk0G02 (G:57-272)
1e: CATH_2fk0I02 (I:57-272)
1f: CATH_2fk0K02 (K:57-272)
1g: CATH_2fk0M02 (M:57-272)
1h: CATH_2fk0O02 (O:57-272)
1i: CATH_2fk0Q02 (Q:57-272)
2a: CATH_2fk0B00 (B:1-175)
2b: CATH_2fk0D00 (D:1-175)
2c: CATH_2fk0F00 (F:1-175)
2d: CATH_2fk0H00 (H:1-175)
2e: CATH_2fk0J00 (J:1-175)
2f: CATH_2fk0L00 (L:1-175)
2g: CATH_2fk0N00 (N:1-175)
2h: CATH_2fk0P00 (P:1-175)
2i: CATH_2fk0R00 (R:1-175)
3a: CATH_2fk0A01 (A:10-56,A:273-324)
3b: CATH_2fk0C01 (C:10-56,C:273-324)
3c: CATH_2fk0E01 (E:10-56,E:273-324)
3d: CATH_2fk0G01 (G:10-56,G:273-324)
3e: CATH_2fk0I01 (I:10-56,I:273-324)
3f: CATH_2fk0K01 (K:10-56,K:273-324)
3g: CATH_2fk0M01 (M:10-56,M:273-324)
3h: CATH_2fk0O01 (O:10-56,O:273-324)
3i: CATH_2fk0Q01 (Q:10-56,Q:273-324)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/viet nam/1203/2004(h5n1)). Organism_taxid: 284218. Strain: a/vietnam/1203/2004.
(1)
1a
2fk0A02
A:57-272
1b
2fk0C02
C:57-272
1c
2fk0E02
E:57-272
1d
2fk0G02
G:57-272
1e
2fk0I02
I:57-272
1f
2fk0K02
K:57-272
1g
2fk0M02
M:57-272
1h
2fk0O02
O:57-272
1i
2fk0Q02
Q:57-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/viet nam/1203/2004(h5n1)). Organism_taxid: 284218. Strain: a/vietnam/1203/2004.
(1)
2a
2fk0B00
B:1-175
2b
2fk0D00
D:1-175
2c
2fk0F00
F:1-175
2d
2fk0H00
H:1-175
2e
2fk0J00
J:1-175
2f
2fk0L00
L:1-175
2g
2fk0N00
N:1-175
2h
2fk0P00
P:1-175
2i
2fk0R00
R:1-175
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/viet nam/1203/2004(h5n1)). Organism_taxid: 284218. Strain: a/vietnam/1203/2004.
(1)
3a
2fk0A01
A:10-56,A:273-324
3b
2fk0C01
C:10-56,C:273-324
3c
2fk0E01
E:10-56,E:273-324
3d
2fk0G01
G:10-56,G:273-324
3e
2fk0I01
I:10-56,I:273-324
3f
2fk0K01
K:10-56,K:273-324
3g
2fk0M01
M:10-56,M:273-324
3h
2fk0O01
O:10-56,O:273-324
3i
2fk0Q01
Q:10-56,Q:273-324
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (725 KB)
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Biol.Unit 1 (240 KB)
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