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2FJU
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
ACTIVATED RAC1 BOUND TO ITS EFFECTOR PHOSPHOLIPASE C BETA 2
Authors
:
M. R. Jezyk, J. T. Snyder, T. K. Harden, J. Sondek
Date
:
03 Jan 06 (Deposition) - 21 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Signaling Protein, Apoptosis/Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. R. Jezyk, J. T. Snyder, S. Gershberg, D. K. Worthylake, T. K. Harden, J. Sondek
Crystal Structure Of Rac1 Bound To Its Effector Phospholipase C-Beta2.
Nat. Struct. Mol. Biol. V. 13 1135 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GSP
1
Ligand/Ion
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:17 , ILE A:33 , THR A:35 , HOH A:1010 , GSP A:2466
BINDING SITE FOR RESIDUE MG A 179
2
AC2
SOFTWARE
ASN B:328 , GLU B:357 , ASP B:359 , GLU B:408 , HOH B:1073 , HOH B:1136
BINDING SITE FOR RESIDUE CA B 1000
3
AC3
SOFTWARE
GLY A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , THR A:35 , GLY A:60 , LYS A:116 , ASP A:118 , LEU A:119 , SER A:158 , ALA A:159 , LEU A:160 , MG A:179 , HOH A:1010 , HOH A:1233 , HOH A:1245
BINDING SITE FOR RESIDUE GSP A 2466
[
close Site info
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SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014540 (N26D, chain A, )
02: VAR_014541 (F28L, chain A, )
03: VAR_014542 (A59T, chain A, )
04: VAR_014543 (D63G, chain A, )
05: VAR_014545 (V93G, chain A, )
06: VAR_014544 (V93I, chain A, )
07: VAR_014546 (T108I, chain A, )
08: VAR_014547 (K130R, chain A, )
09: VAR_014548 (K133E, chain A, )
10: VAR_033303 (T135I, chain A, )
11: VAR_047509 (N324I, chain B, )
12: VAR_047510 (R594H, chain B, )
13: VAR_047511 (P660L, chain B, )
14: VAR_047512 (G708R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
A
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
A
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
A
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
A
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
A
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
A
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
A
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
A
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
A
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
A
T
135
I
11
UniProt
VAR_047509
N
324
I
PLCB2_HUMAN
Polymorphism
45628633
B
N
324
I
12
UniProt
VAR_047510
R
598
H
PLCB2_HUMAN
Polymorphism
8025153
B
R
594
H
13
UniProt
VAR_047511
P
664
L
PLCB2_HUMAN
Polymorphism
9972332
B
P
660
L
14
UniProt
VAR_047512
G
712
R
PLCB2_HUMAN
Polymorphism
28395835
B
G
708
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176)
2: PIPLC_X_DOMAIN (B:312-463)
3: PIPLC_Y_DOMAIN (B:542-658)
4: C2 (B:678-763)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
1
A:1-176
2
PIPLC_X_DOMAIN
PS50007
Phosphatidylinositol-specific phospholipase X-box domain profile.
PLCB2_HUMAN
312-463
1
B:312-463
3
PIPLC_Y_DOMAIN
PS50008
Phosphatidylinositol-specific phospholipase Y-box domain profile.
PLCB2_HUMAN
546-662
1
B:542-658
4
C2
PS50004
C2 domain profile.
PLCB2_HUMAN
669-767
1
B:678-763
[
close PROSITE info
]
Exons
(28, 28)
Info
All Exons
Exon 1.1 (B:11-28)
Exon 1.2 (B:29-54)
Exon 1.3 (B:55-77)
Exon 1.4 (B:78-124)
Exon 1.5 (B:125-151)
Exon 1.6 (B:151-169)
Exon 1.7 (B:169-194)
Exon 1.8 (B:195-227)
Exon 1.9 (B:235-284 (gaps))
Exon 1.10 (B:284-333)
Exon 1.11 (B:333-385)
Exon 1.12 (B:386-413)
Exon 1.13 (B:413-441)
Exon 1.14b (B:442-464)
Exon 1.15b (B:512-529)
Exon 1.16 (B:530-562)
Exon 1.17 (B:562-590)
Exon 1.18 (B:590-632)
Exon 1.19 (B:632-683 (gaps))
Exon 1.20 (B:684-738)
Exon 1.21 (B:739-772)
Exon 1.22 (B:772-799)
Exon 2.1a (A:1-12)
Exon 2.3 (A:12-36)
Exon 2.5 (A:36-75)
Exon 2.7b (A:76-96)
Exon 2.8b (A:97-150)
Exon 2.9f (A:150-177)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/1.14b
15: Boundary 1.14b/1.15b
16: Boundary 1.15b/1.16
17: Boundary 1.16/1.17
18: Boundary 1.17/1.18
19: Boundary 1.18/1.19
20: Boundary 1.19/1.20
21: Boundary 1.20/1.21
22: Boundary 1.21/1.22
23: Boundary 1.22/1.23
24: Boundary -/2.1a
25: Boundary 2.1a/2.3
26: Boundary 2.3/2.5
27: Boundary 2.5/2.7b
28: Boundary 2.7b/2.8b
29: Boundary 2.8b/2.9f
30: Boundary 2.9f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260402
1
ENSE00002168435
chr15:
40600174-40599790
385
PLCB2_HUMAN
1-28
28
1
B:11-28
18
1.2
ENST00000260402
2
ENSE00001625850
chr15:
40596279-40596202
78
PLCB2_HUMAN
29-54
26
1
B:29-54
26
1.3
ENST00000260402
3
ENSE00001717589
chr15:
40595557-40595489
69
PLCB2_HUMAN
55-77
23
1
B:55-77
23
1.4
ENST00000260402
4
ENSE00001777308
chr15:
40594810-40594670
141
PLCB2_HUMAN
78-124
47
1
B:78-124
47
1.5
ENST00000260402
5
ENSE00001686556
chr15:
40594550-40594471
80
PLCB2_HUMAN
125-151
27
1
B:125-151
27
1.6
ENST00000260402
6
ENSE00001800063
chr15:
40594390-40594337
54
PLCB2_HUMAN
151-169
19
1
B:151-169
19
1.7
ENST00000260402
7
ENSE00001644083
chr15:
40594233-40594158
76
PLCB2_HUMAN
169-194
26
1
B:169-194
26
1.8
ENST00000260402
8
ENSE00001667829
chr15:
40591429-40591329
101
PLCB2_HUMAN
195-228
34
1
B:195-227
33
1.9
ENST00000260402
9
ENSE00001653269
chr15:
40591165-40590999
167
PLCB2_HUMAN
228-284
57
1
B:235-284 (gaps)
50
1.10
ENST00000260402
10
ENSE00001728774
chr15:
40590909-40590763
147
PLCB2_HUMAN
284-333
50
1
B:284-333
50
1.11
ENST00000260402
11
ENSE00001621090
chr15:
40590581-40590424
158
PLCB2_HUMAN
333-385
53
1
B:333-385
53
1.12
ENST00000260402
12
ENSE00001795481
chr15:
40590160-40590078
83
PLCB2_HUMAN
386-413
28
1
B:386-413
28
1.13
ENST00000260402
13
ENSE00001762039
chr15:
40589806-40589722
85
PLCB2_HUMAN
413-441
29
1
B:413-441
29
1.14b
ENST00000260402
14b
ENSE00000883849
chr15:
40589109-40588947
163
PLCB2_HUMAN
442-496
55
1
B:442-464
23
1.15b
ENST00000260402
15b
ENSE00000883848
chr15:
40588835-40588723
113
PLCB2_HUMAN
496-533
38
1
B:512-529
18
1.16
ENST00000260402
16
ENSE00000883847
chr15:
40588593-40588497
97
PLCB2_HUMAN
534-566
33
1
B:530-562
33
1.17
ENST00000260402
17
ENSE00000883846
chr15:
40587486-40587402
85
PLCB2_HUMAN
566-594
29
1
B:562-590
29
1.18
ENST00000260402
18
ENSE00000883845
chr15:
40587261-40587137
125
PLCB2_HUMAN
594-636
43
1
B:590-632
43
1.19
ENST00000260402
19
ENSE00001506972
chr15:
40586621-40586467
155
PLCB2_HUMAN
636-687
52
1
B:632-683 (gaps)
52
1.20
ENST00000260402
20
ENSE00000883843
chr15:
40585925-40585761
165
PLCB2_HUMAN
688-742
55
1
B:684-738
55
1.21
ENST00000260402
21
ENSE00000883842
chr15:
40585226-40585127
100
PLCB2_HUMAN
743-776
34
1
B:739-772
34
1.22
ENST00000260402
22
ENSE00000883841
chr15:
40584644-40584540
105
PLCB2_HUMAN
776-811
36
1
B:772-799
28
1.23
ENST00000260402
23
ENSE00000883840
chr15:
40584359-40584265
95
PLCB2_HUMAN
811-842
32
0
-
-
1.24
ENST00000260402
24
ENSE00000883839
chr15:
40584125-40584050
76
PLCB2_HUMAN
843-868
26
0
-
-
1.25
ENST00000260402
25
ENSE00000883838
chr15:
40583851-40583807
45
PLCB2_HUMAN
868-883
16
0
-
-
1.26
ENST00000260402
26
ENSE00000883837
chr15:
40583688-40583466
223
PLCB2_HUMAN
883-957
75
0
-
-
1.27a
ENST00000260402
27a
ENSE00000883836
chr15:
40583384-40583219
166
PLCB2_HUMAN
957-1012
56
0
-
-
1.28
ENST00000260402
28
ENSE00000883835
chr15:
40583038-40582962
77
PLCB2_HUMAN
1013-1038
26
0
-
-
1.29
ENST00000260402
29
ENSE00000883834
chr15:
40582873-40582778
96
PLCB2_HUMAN
1038-1070
33
0
-
-
1.30
ENST00000260402
30
ENSE00000883833
chr15:
40582283-40582226
58
PLCB2_HUMAN
1070-1089
20
0
-
-
1.31
ENST00000260402
31
ENSE00000883832
chr15:
40581559-40581473
87
PLCB2_HUMAN
1090-1118
29
0
-
-
1.32
ENST00000260402
32
ENSE00000883831
chr15:
40581119-40580100
1020
PLCB2_HUMAN
1119-1185
67
0
-
-
2.1a
ENST00000348035
1a
ENSE00001876788
chr7:
6414154-6414401
248
RAC1_HUMAN
1-12
12
1
A:1-12
12
2.3
ENST00000348035
3
ENSE00001676753
chr7:
6426843-6426914
72
RAC1_HUMAN
12-36
25
1
A:12-36
25
2.5
ENST00000348035
5
ENSE00001643043
chr7:
6431555-6431672
118
RAC1_HUMAN
36-75
40
1
A:36-75
40
2.7b
ENST00000348035
7b
ENSE00000831659
chr7:
6439757-6439819
63
RAC1_HUMAN
76-96
21
1
A:76-96
21
2.8b
ENST00000348035
8b
ENSE00001637705
chr7:
6441499-6441658
160
RAC1_HUMAN
97-150
54
1
A:97-150
54
2.9f
ENST00000348035
9f
ENSE00001551063
chr7:
6441947-6443608
1662
RAC1_HUMAN
150-192
43
1
A:150-177
28
[
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SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d2fjub1 (B:142-311)
2a: SCOP_d2fjub2 (B:678-799)
3a: SCOP_d2fjub3 (B:11-141)
4a: SCOP_d2fjua_ (A:)
5a: SCOP_d2fjub4 (B:312-660)
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Folds
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
EF-hand modules in multidomain proteins
(29)
Protein domain
:
Phospholipase C-beta-2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2fjub1
B:142-311
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
Phospholipase C-beta-2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2fjub2
B:678-799
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Phospholipase C-beta-2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d2fjub3
B:11-141
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
4a
d2fjua_
A:
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
PLC-like phosphodiesterases
(46)
Family
:
Mammalian PLC
(12)
Protein domain
:
Phospholipase C-beta-2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
5a
d2fjub4
B:312-660
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2fjuA00 (A:1-177)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2fjuA00
A:1-177
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Nucleic
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Protein & NOT Site
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Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (159 KB)
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