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2FJD
Asym. Unit
Info
Asym.Unit (298 KB)
Biol.Unit 1 (293 KB)
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(1)
Title
:
ADENOSINE-5-PHOSPHOSULFATE REDUCTASE IN COMPLEX WITH SULFITE (COVALENT ADDUCT)
Authors
:
A. Schiffer, G. Fritz, P. M. Kroneck, U. Ermler
Date
:
02 Jan 06 (Deposition) - 28 Mar 06 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aps Reductase, Sulfur Cycle, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schiffer, G. Fritz, P. M. Kroneck, U. Ermler
Reaction Mechanism Of The Iron-Sulfur Flavoenzyme Adenosine-5'-Phosphosulfate Reductase Based On The Structural Characterization Of Different Enzymatic States
Biochemistry V. 45 2960 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: IRON/SULFUR CLUSTER (SF4a)
1b: IRON/SULFUR CLUSTER (SF4b)
1c: IRON/SULFUR CLUSTER (SF4c)
1d: IRON/SULFUR CLUSTER (SF4d)
2a: (S)-10-((2S,3S,4R)-5-((S)-((S)-(((... (SFDa)
2b: (S)-10-((2S,3S,4R)-5-((S)-((S)-(((... (SFDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
2
SFD
2
Ligand/Ion
(S)-10-((2S,3S,4R)-5-((S)-((S)-(((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHOXY)(HYDROXY)PHOSPHORYLOXY)(HYDROXY)PHOSPHORYLOXY)-2,3,4-TRIHYDROXYPENTYL)-7,8-DIMETHYL-2,4-DIOXO-2,3,4,4A-TETRAHYDROBENZO[G]PTERIDINE-5(10H)-SULFONIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:29 , GLY A:30 , GLY A:31 , PHE A:32 , SER A:33 , GLU A:56 , LYS A:57 , SER A:63 , GLY A:64 , ALA A:65 , VAL A:66 , LEU A:70 , ALA A:72 , ILE A:73 , ASN A:74 , VAL A:174 , PHE A:175 , ILE A:176 , ALA A:213 , THR A:214 , GLY A:215 , TRP A:234 , TYR A:235 , ALA A:236 , ASP A:239 , SER A:242 , ARG A:265 , MET A:365 , SER A:397 , HIS A:398 , GLY A:438 , ASP A:439 , PHE A:448 , SER A:449 , SER A:452 , HOH A:5041 , HOH A:5045 , HOH A:5121 , HOH A:5316 , HOH A:5321 , HOH A:5718 , HOH A:7001 , HOH A:7587 , TRP B:748
BINDING SITE FOR RESIDUE SFD A 1000
2
AC2
SOFTWARE
GLY C:2029 , GLY C:2030 , GLY C:2031 , PHE C:2032 , SER C:2033 , GLU C:2056 , LYS C:2057 , SER C:2063 , GLY C:2064 , ALA C:2065 , VAL C:2066 , LEU C:2070 , ALA C:2072 , ILE C:2073 , ASN C:2074 , PHE C:2175 , ILE C:2176 , ALA C:2213 , THR C:2214 , GLY C:2215 , TRP C:2234 , TYR C:2235 , ALA C:2236 , ASP C:2239 , SER C:2242 , ARG C:2265 , MET C:2365 , SER C:2397 , HIS C:2398 , GLY C:2438 , ASP C:2439 , PHE C:2448 , SER C:2449 , SER C:2452 , HOH C:5001 , HOH C:5008 , HOH C:5048 , HOH C:5059 , HOH C:5197 , HOH C:5320 , HOH C:5533 , HOH C:5621 , HOH C:7586
BINDING SITE FOR RESIDUE SFD C 3000
3
AC3
SOFTWARE
SER B:703 , CYS B:725 , ASN B:741 , CYS B:747 , TRP B:748 , GLU B:749 , CYS B:750 , TYR B:751 , CYS B:753
BINDING SITE FOR RESIDUE SF4 B 1100
4
AC4
SOFTWARE
CYS B:710 , ASP B:711 , GLY B:712 , CYS B:713 , THR B:719 , ALA B:720 , CYS B:721 , CYS B:757 , ILE B:762
BINDING SITE FOR RESIDUE SF4 B 1110
5
AC5
SOFTWARE
SER D:2703 , CYS D:2725 , PRO D:2726 , ASN D:2741 , CYS D:2747 , TRP D:2748 , CYS D:2750 , TYR D:2751 , CYS D:2753
BINDING SITE FOR RESIDUE SF4 D 3100
6
AC6
SOFTWARE
CYS D:2710 , ASP D:2711 , GLY D:2712 , CYS D:2713 , THR D:2719 , ALA D:2720 , CYS D:2721 , CYS D:2757 , ILE D:2762
BINDING SITE FOR RESIDUE SF4 D 3110
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2fjdb_ (B:)
1b: SCOP_d2fjdd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
4Fe-4S ferredoxins
(143)
Family
:
Ferredoxin domains from multidomain proteins
(69)
Protein domain
:
Adenylylsulfate reductase B subunit
(6)
Archaeoglobus fulgidus [TaxId: 2234]
(6)
1a
d2fjdb_
B:
1b
d2fjdd_
D:
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2fjdB01 (B:702-767)
1b: CATH_2fjdD01 (D:2702-2767)
2a: CATH_2fjdA01 (A:12-261,A:394-487,A:615-634)
2b: CATH_2fjdC01 (C:2012-2261,C:2394-2487,C:2615-2634)
3a: CATH_2fjdA02 (A:262-393)
3b: CATH_2fjdC02 (C:2262-2393)
4a: CATH_2fjdA03 (A:488-608)
4b: CATH_2fjdC03 (C:2488-2608)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.20, no name defined]
(120)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(4)
1a
2fjdB01
B:702-767
1b
2fjdD01
D:2702-2767
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(4)
2a
2fjdA01
A:12-261,A:394-487,A:615-634
2b
2fjdC01
C:2012-2261,C:2394-2487,C:2615-2634
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C3; Chain A, domain 1
(40)
Homologous Superfamily
:
Flavocytochrome C3; Chain A, domain 1
(40)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(4)
3a
2fjdA02
A:262-393
3b
2fjdC02
C:2262-2393
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.100, no name defined]
(37)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(4)
4a
2fjdA03
A:488-608
4b
2fjdC03
C:2488-2608
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (298 KB)
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