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2FHC
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF KLEBSIELLA PNEUMONIAE PULLULANASE COMPLEXED WITH MALTOTRIOSE
Authors
:
B. Mikami, H. Iwamoto, Y. Katsuya, H. -J. Yoon, E. Demirkan-Sarikaya, D. Malle
Date
:
23 Dec 05 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Multiple Domain, Beta-Alpha-Barrel, Alpha-Amylase-Family, Complex With Maltotriose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Mikami, H. Iwamoto, D. Malle, H. -J. Yoon, E. Demirkan-Sarikaya, Y. Mezaki, Y. Katsuya
Crystal Structure Of Pullulanase: Evidence For Parallel Binding Of Oligosaccharides In The Active Site
J. Mol. Biol. V. 359 690 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
2e: ALPHA-D-GLUCOSE (GLCe)
2f: ALPHA-D-GLUCOSE (GLCf)
2g: ALPHA-D-GLUCOSE (GLCg)
2h: ALPHA-D-GLUCOSE (GLCh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
GLC
8
Ligand/Ion
ALPHA-D-GLUCOSE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:68 , THR A:642 , ARG A:889 , ASP A:890 , GLC A:1093 , GLC A:1097 , GLC A:1098 , HOH A:1266 , HOH A:1675
BINDING SITE FOR RESIDUE GLC A 1092
02
AC2
SOFTWARE
SER A:67 , GLU A:706 , TRP A:708 , ASP A:834 , ASN A:835 , GLC A:1092 , GLC A:1094 , GLC A:1098 , HOH A:1675
BINDING SITE FOR RESIDUE GLC A 1093
03
AC3
SOFTWARE
SER A:66 , SER A:67 , ASP A:734 , ARG A:737 , PHE A:746 , GLC A:1093 , HOH A:1607 , HOH A:1615 , HOH A:1719 , HOH A:1960
BINDING SITE FOR RESIDUE GLC A 1094
04
AC4
SOFTWARE
CYS A:643 , TYR A:892 , GLC A:1097 , HOH A:2252
BINDING SITE FOR RESIDUE GLC A 1096
05
AC5
SOFTWARE
TRP A:557 , TYR A:559 , ASP A:560 , ASP A:890 , TYR A:892 , GLC A:1092 , GLC A:1096 , GLC A:1098 , HOH A:1139 , HOH A:1241
BINDING SITE FOR RESIDUE GLC A 1097
06
AC6
SOFTWARE
TRP A:557 , TYR A:559 , HIS A:607 , THR A:642 , ARG A:675 , ASP A:677 , LEU A:678 , GLU A:706 , HIS A:833 , ASP A:834 , GLC A:1092 , GLC A:1093 , GLC A:1097
BINDING SITE FOR RESIDUE GLC A 1098
07
AC7
SOFTWARE
TYR A:78 , ASP A:138 , GLC A:1100
BINDING SITE FOR RESIDUE GLC A 1099
08
AC8
SOFTWARE
TYR A:78 , TRP A:95 , LYS A:133 , GLC A:1099 , HOH A:2348
BINDING SITE FOR RESIDUE GLC A 1100
09
AC9
SOFTWARE
ALA A:550 , ASP A:553 , TYR A:555 , ASP A:893 , HOH A:1272 , HOH A:1494 , HOH A:1495
BINDING SITE FOR RESIDUE CA A 2401
10
BC1
SOFTWARE
ASP A:994 , SER A:1001 , ASP A:1003 , VAL A:1006 , GLN A:1070 , HOH A:1525
BINDING SITE FOR RESIDUE CA A 2402
11
BC2
SOFTWARE
HOH A:1247 , HOH A:1253 , HOH A:1425 , HOH A:1746 , HOH A:1747 , HOH A:1748
BINDING SITE FOR RESIDUE CA A 2403
12
BC3
SOFTWARE
ASP A:481 , LEU A:482 , GLU A:487 , GLU A:568 , HOH A:1254 , HOH A:1496
BINDING SITE FOR RESIDUE CA A 2404
13
BC4
SOFTWARE
ASP A:148 , THR A:150 , ASP A:162
BINDING SITE FOR RESIDUE CA A 2405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d2fhca4 (A:966-1083)
2a: SCOP_d2fhca1 (A:288-402)
2b: SCOP_d2fhca2 (A:163-287)
3a: SCOP_d2fhca3 (A:32-162)
4a: SCOP_d2fhca5 (A:403-965)
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Classes
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)
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)
Folds
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(
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Superfamilies
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)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Pullulanase PulA
(6)
Klebsiella pneumoniae [TaxId: 573]
(6)
1a
d2fhca4
A:966-1083
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Pullulanase PulA
(6)
Klebsiella pneumoniae [TaxId: 573]
(6)
2a
d2fhca1
A:288-402
2b
d2fhca2
A:163-287
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
PUD-like
(8)
Protein domain
:
Pullulanase PulA
(8)
Klebsiella pneumoniae [TaxId: 573]
(3)
3a
d2fhca3
A:32-162
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Pullulanase PulA
(6)
Klebsiella pneumoniae [TaxId: 573]
(6)
4a
d2fhca5
A:403-965
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (197 KB)
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Header - Biol.Unit 1
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