PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2FH4
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (52 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
C-TERMINAL HALF OF GELSOLIN SOAKED IN EGTA AT PH 8
Authors
:
S. Chumnarnsilpa, A. Loonchanta, B. Xue, H. Choe, D. Urosev, H. Wang, L. D. Burtnick, R. C. Robinson
Date
:
23 Dec 05 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Gelsolin, Egta, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chumnarnsilpa, A. Loonchanta, B. Xue, H. Choe, D. Urosev, H. Wang, U. Lindberg, L. D. Burtnick, R. C. Robinson
Calcium Ion Exchange In Crystalline Gelsolin
J. Mol. Biol. V. 357 773 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036339 (S584N, chain A/B/C, )
2: VAR_033958 (R641L, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036339
S
611
N
GELS_HUMAN
Unclassified
---
A/B/C
S
584
N
2
UniProt
VAR_033958
R
668
L
GELS_HUMAN
Polymorphism
9696578
A/B/C
R
641
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(9, 27)
Info
All Exons
Exon 1.21a (A:412-421 | B:414-421 | C:414-421)
Exon 1.22b (A:422-466 | B:422-466 (gaps) | C:4...)
Exon 1.23 (A:466-496 | B:466-496 | C:466-496)
Exon 1.24a (A:497-553 (gaps) | B:497-553 (gaps...)
Exon 1.25 (A:554-612 | B:554-612 | C:554-612)
Exon 1.26b (A:612-645 (gaps) | B:612-653 | C:6...)
Exon 1.26c (A:656-679 | B:654-679 | C:654-679)
Exon 1.27a (A:680-700 | B:680-700 | C:680-700)
Exon 1.28d (A:700-741 (gaps) | B:700-741 | C:7...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.20/1.21a
02: Boundary 1.21a/1.22b
03: Boundary 1.22b/1.23
04: Boundary 1.23/1.24a
05: Boundary 1.24a/1.25
06: Boundary 1.25/1.26b
07: Boundary 1.26b/1.26c
08: Boundary 1.26c/1.27a
09: Boundary 1.27a/1.28d
10: Boundary 1.28d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.14
ENST00000373818
14
ENSE00001461665
chr9:
124062071-124062283
213
GELS_HUMAN
1-48
48
0
-
-
1.16d
ENST00000373818
16d
ENSE00001725493
chr9:
124064241-124064445
205
GELS_HUMAN
49-117
69
0
-
-
1.17
ENST00000373818
17
ENSE00001745162
chr9:
124065189-124065343
155
GELS_HUMAN
117-168
52
0
-
-
1.18b
ENST00000373818
18b
ENSE00001764209
chr9:
124072962-124073123
162
GELS_HUMAN
169-222
54
0
-
-
1.18f
ENST00000373818
18f
ENSE00001689299
chr9:
124074617-124074766
150
GELS_HUMAN
223-272
50
0
-
-
1.18i
ENST00000373818
18i
ENSE00001727906
chr9:
124076212-124076301
90
GELS_HUMAN
273-302
30
0
-
-
1.19b
ENST00000373818
19b
ENSE00001732099
chr9:
124079364-124079496
133
GELS_HUMAN
303-347
45
0
-
-
1.20
ENST00000373818
20
ENSE00001734404
chr9:
124080684-124080772
89
GELS_HUMAN
347-376
30
0
-
-
1.21a
ENST00000373818
21a
ENSE00001618926
chr9:
124080943-124081158
216
GELS_HUMAN
377-448
72
3
A:412-421
B:414-421
C:414-421
10
8
8
1.22b
ENST00000373818
22b
ENSE00001591416
chr9:
124083546-124083679
134
GELS_HUMAN
449-493
45
3
A:422-466
B:422-466 (gaps)
C:422-466 (gaps)
45
45
45
1.23
ENST00000373818
23
ENSE00001735249
chr9:
124086832-124086922
91
GELS_HUMAN
493-523
31
3
A:466-496
B:466-496
C:466-496
31
31
31
1.24a
ENST00000373818
24a
ENSE00001704432
chr9:
124088790-124088960
171
GELS_HUMAN
524-580
57
3
A:497-553 (gaps)
B:497-553 (gaps)
C:497-553 (gaps)
57
57
57
1.25
ENST00000373818
25
ENSE00001668309
chr9:
124089586-124089760
175
GELS_HUMAN
581-639
59
3
A:554-612
B:554-612
C:554-612
59
59
59
1.26b
ENST00000373818
26b
ENSE00001721539
chr9:
124091169-124091293
125
GELS_HUMAN
639-680
42
3
A:612-645 (gaps)
B:612-653
C:612-653
34
42
42
1.26c
ENST00000373818
26c
ENSE00001771020
chr9:
124091516-124091593
78
GELS_HUMAN
681-706
26
3
A:656-679
B:654-679
C:654-679
24
26
26
1.27a
ENST00000373818
27a
ENSE00001779366
chr9:
124093666-124093726
61
GELS_HUMAN
707-727
21
3
A:680-700
B:680-700
C:680-700
21
21
21
1.28d
ENST00000373818
28d
ENSE00001732346
chr9:
124094712-124095120
409
GELS_HUMAN
727-782
56
3
A:700-741 (gaps)
B:700-741
C:700-741
42
42
42
[
close EXON info
]
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d2fh4a1 (A:412-532)
1b: SCOP_d2fh4a2 (A:533-628)
1c: SCOP_d2fh4a3 (A:629-741)
1d: SCOP_d2fh4b1 (B:414-532)
1e: SCOP_d2fh4b2 (B:533-628)
1f: SCOP_d2fh4b3 (B:629-741)
1g: SCOP_d2fh4c1 (C:414-532)
1h: SCOP_d2fh4c2 (C:533-628)
1i: SCOP_d2fh4c3 (C:629-741)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2fh4a1
A:412-532
1b
d2fh4a2
A:533-628
1c
d2fh4a3
A:629-741
1d
d2fh4b1
B:414-532
1e
d2fh4b2
B:533-628
1f
d2fh4b3
B:629-741
1g
d2fh4c1
C:414-532
1h
d2fh4c2
C:533-628
1i
d2fh4c3
C:629-741
[
close SCOP info
]
CATH Domains
(1, 9)
Info
all CATH domains
1a: CATH_2fh4A01 (A:412-532)
1b: CATH_2fh4B01 (B:414-532)
1c: CATH_2fh4C01 (C:414-532)
1d: CATH_2fh4B03 (B:629-741)
1e: CATH_2fh4C03 (C:629-741)
1f: CATH_2fh4A03 (A:629-741)
1g: CATH_2fh4A02 (A:533-627)
1h: CATH_2fh4B02 (B:533-627)
1i: CATH_2fh4C02 (C:533-627)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Human (Homo sapiens)
(36)
1a
2fh4A01
A:412-532
1b
2fh4B01
B:414-532
1c
2fh4C01
C:414-532
1d
2fh4B03
B:629-741
1e
2fh4C03
C:629-741
1f
2fh4A03
A:629-741
1g
2fh4A02
A:533-627
1h
2fh4B02
B:533-627
1i
2fh4C02
C:533-627
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
Biol.Unit 3 (52 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FH4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
