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2FFV
Biol. Unit 3
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Asym.Unit (165 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (314 KB)
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(1)
Title
:
HUMAN PPGALNACT-2 COMPLEXED WITH MANGANESE AND UDP
Authors
:
T. A. Fritz
Date
:
20 Dec 05 (Deposition) - 31 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Ppgalnact; Mucin; Glycosyltransferase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. A. Fritz, J. Raman, L. A. Tabak
Dynamic Association Between The Catalytic And Lectin Domain Of Human Udp-Galnac:Polypeptide {Alpha}-N-Acetylgalactosaminyltransferase-2
J. Biol. Chem. V. 281 8613 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
2a: URIDINE-5'-DIPHOSPHATE (UDPa)
2b: URIDINE-5'-DIPHOSPHATE (UDPb)
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No.
Name
Count
Type
Full Name
1
MN
-1
Ligand/Ion
MANGANESE (II) ION
2
UDP
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:224 , HIS A:226 , HIS A:359 , UDP A:5601
BINDING SITE FOR RESIDUE MN A 5600
2
AC2
SOFTWARE
ASP B:224 , HIS B:226 , HIS B:359 , UDP B:9601
BINDING SITE FOR RESIDUE MN B 9600
3
AC3
SOFTWARE
THR A:143 , PHE A:144 , HIS A:145 , ASP A:176 , ARG A:201 , GLY A:203 , LEU A:204 , SER A:207 , ASP A:224 , HIS A:226 , VAL A:330 , HIS A:359 , ARG A:362 , HIS A:365 , MN A:5600
BINDING SITE FOR RESIDUE UDP A 5601
4
AC4
SOFTWARE
THR B:143 , PHE B:144 , ASP B:176 , ARG B:201 , GLY B:203 , LEU B:204 , ASP B:224 , HIS B:226 , VAL B:330 , HIS B:359 , ARG B:362 , HIS B:365 , MN B:9600
BINDING SITE FOR RESIDUE UDP B 9601
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049240 (R245H, chain A/B, )
2: VAR_019575 (V554M, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049240
R
245
H
GALT2_HUMAN
Polymorphism
1923950
A/B
R
245
H
2
UniProt
VAR_019575
V
554
M
GALT2_HUMAN
Polymorphism
2273970
A/B
V
554
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RICIN_B_LECTIN (A:456-566,B:456-566)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RICIN_B_LECTIN
PS50231
Lectin domain of ricin B chain profile.
GALT2_HUMAN
456-566
4
A:456-566
B:456-566
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Exons
(0, 0)
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