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Getting 'Exon' information from database.
2FFU
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PPGALNACT-2 COMPLEXED WITH UDP AND EA2
Authors
:
T. A. Fritz
Date
:
20 Dec 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (1x)
Keywords
:
Ppgalnact; Mucin; Glycosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. A. Fritz, J. Raman, L. A. Tabak
Dynamic Association Between The Catalytic And Lectin Domains Of Human Udp-Galnac:Polypeptide {Alpha}-N-Acetylgalactosaminyltransferase-2
J. Biol. Chem. V. 281 8613 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
2a: URIDINE-5'-DIPHOSPHATE (UDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
1
Ligand/Ion
MANGANESE (II) ION
2
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:224 , HIS A:226 , HIS A:359 , UDP A:601 , HOH A:1054
BINDING SITE FOR RESIDUE MN A 600
2
AC2
SOFTWARE
THR A:143 , PHE A:144 , HIS A:145 , ASP A:176 , ARG A:201 , GLY A:203 , ASP A:224 , SER A:225 , HIS A:226 , VAL A:330 , TRP A:331 , HIS A:359 , ARG A:362 , HIS A:365 , TYR A:367 , MN A:600 , HOH A:711 , HOH A:733 , HOH A:756 , HOH A:779 , HOH A:822 , HOH A:1054 , THR P:6 , THR P:7
BINDING SITE FOR RESIDUE UDP A 601
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049240 (R245H, chain A, )
2: VAR_019575 (V554M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049240
R
245
H
GALT2_HUMAN
Polymorphism
1923950
A
R
245
H
2
UniProt
VAR_019575
V
554
M
GALT2_HUMAN
Polymorphism
2273970
A
V
554
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RICIN_B_LECTIN (A:456-566)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RICIN_B_LECTIN
PS50231
Lectin domain of ricin B chain profile.
GALT2_HUMAN
456-566
1
A:456-566
[
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Exons
(14, 14)
Info
All Exons
Exon 1.5 (A:75-125)
Exon 1.6 (A:125-158)
Exon 1.7 (A:158-181)
Exon 1.8 (A:181-203)
Exon 1.9 (A:203-243)
Exon 1.10 (A:244-273)
Exon 1.11 (A:273-302)
Exon 1.12 (A:302-337)
Exon 1.13 (A:337-379)
Exon 1.15c (A:379-410)
Exon 1.16a (A:410-438)
Exon 1.17 (A:438-480)
Exon 1.18 (A:481-520)
Exon 1.19b (A:521-568)
View:
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All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.15c
11: Boundary 1.15c/1.16a
12: Boundary 1.16a/1.17
13: Boundary 1.17/1.18
14: Boundary 1.18/1.19b
15: Boundary 1.19b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000366672
2a
ENSE00001442291
chr1:
230202956-230203153
198
GALT2_HUMAN
1-42
42
0
-
-
1.4
ENST00000366672
4
ENSE00001007552
chr1:
230313964-230314057
94
GALT2_HUMAN
43-74
32
0
-
-
1.5
ENST00000366672
5
ENSE00001007567
chr1:
230338883-230339036
154
GALT2_HUMAN
74-125
52
1
A:75-125
51
1.6
ENST00000366672
6
ENSE00001007559
chr1:
230371760-230371858
99
GALT2_HUMAN
125-158
34
1
A:125-158
34
1.7
ENST00000366672
7
ENSE00001007566
chr1:
230372099-230372166
68
GALT2_HUMAN
158-181
24
1
A:158-181
24
1.8
ENST00000366672
8
ENSE00001007558
chr1:
230372406-230372471
66
GALT2_HUMAN
181-203
23
1
A:181-203
23
1.9
ENST00000366672
9
ENSE00001007570
chr1:
230379052-230379173
122
GALT2_HUMAN
203-243
41
1
A:203-243
41
1.10
ENST00000366672
10
ENSE00001007561
chr1:
230381809-230381896
88
GALT2_HUMAN
244-273
30
1
A:244-273
30
1.11
ENST00000366672
11
ENSE00001007560
chr1:
230384930-230385017
88
GALT2_HUMAN
273-302
30
1
A:273-302
30
1.12
ENST00000366672
12
ENSE00001007564
chr1:
230386203-230386306
104
GALT2_HUMAN
302-337
36
1
A:302-337
36
1.13
ENST00000366672
13
ENSE00001007554
chr1:
230390964-230391090
127
GALT2_HUMAN
337-379
43
1
A:337-379
43
1.15c
ENST00000366672
15c
ENSE00001007562
chr1:
230398319-230398411
93
GALT2_HUMAN
379-410
32
1
A:379-410
32
1.16a
ENST00000366672
16a
ENSE00001007556
chr1:
230398668-230398751
84
GALT2_HUMAN
410-438
29
1
A:410-438
29
1.17
ENST00000366672
17
ENSE00001007563
chr1:
230400987-230401113
127
GALT2_HUMAN
438-480
43
1
A:438-480
43
1.18
ENST00000366672
18
ENSE00001007568
chr1:
230410191-230410310
120
GALT2_HUMAN
481-520
40
1
A:481-520
40
1.19b
ENST00000366672
19b
ENSE00001935591
chr1:
230415049-230417870
2822
GALT2_HUMAN
521-571
51
1
A:521-568
48
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
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Asym.Unit (97 KB)
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