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2FEQ
Biol. Unit 1
Info
Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
ORALLY ACTIVE THROMBIN INHIBITORS
Authors
:
H. Mack, D. Baucke, W. Hornberger, U. E. W. Lange, H. W. Hoeffken
Date
:
16 Dec 05 (Deposition) - 08 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.44
Chains
:
Asym. Unit : D,H,L
Biol. Unit 1: D,H,L (1x)
Biol. Unit 2: D,H,L (2x)
Keywords
:
Thrombin Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Mack, D. Baucke, W. Hornberger, U. E. W. Lange, W. Seitz, H. W. Hoeffken
Orally Active Thrombin Inhibitors. Part 1: Optimization Of The P1-Moiety
Bioorg. Med. Chem. Lett. V. 16 2641 2006
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-A... (34Pa)
2a: 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACI... (ALCa)
3a: 4-HYDROXYPROLINE (HYPa)
4a: SUCCINIC ACID (SINa)
5a: 4-SULFOMETHYL-L-PHENYLALANINE (SMFa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
34P
1
Ligand/Ion
N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({4-[(E)-AMINO(IMINO)METHYL]-1,3-THIAZOL-2-YL}METHYL)-L-PROLINAMIDE
2
ALC
1
Mod. Amino Acid
2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
3
HYP
1
Mod. Amino Acid
4-HYDROXYPROLINE
4
SIN
1
Mod. Amino Acid
SUCCINIC ACID
5
SMF
1
Mod. Amino Acid
4-SULFOMETHYL-L-PHENYLALANINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS H:57 , TYR H:60A , TRP H:60D , GLU H:97A , ASP H:189 , ALA H:190 , SER H:195 , SER H:214 , TRP H:215 , GLY H:216 , GLU H:217 , GLY H:219
BINDING SITE FOR RESIDUE 34P H 1
2
AC2
SOFTWARE
HOH D:43 , PHE H:34 , GLN H:38 , LEU H:40 , ARG H:73 , THR H:74 , ARG H:75 , TYR H:76 , LYS H:81 , ILE H:82 , MET H:84 , HOH H:331
BINDING SITE FOR CHAIN D OF DECAPEPTIDE HIRUDIN ANALOGUE
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_006714 (M32T, chain H, )
2: VAR_011782 (P37T, chain H, )
3: VAR_006715 (R67C, chain H, )
4: VAR_006716 (R73H, chain H, )
5: VAR_006717 (R101W, chain H, )
6: VAR_006718 (E146A, chain H, )
7: VAR_068913 (E164Q, chain H, )
8: VAR_006719 (G226V, chain H, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006714
M
380
T
THRB_HUMAN
Disease (FA2D)
---
H
M
32
T
2
UniProt
VAR_011782
P
386
T
THRB_HUMAN
Polymorphism
5897
H
P
37
T
3
UniProt
VAR_006715
R
425
C
THRB_HUMAN
Disease (FA2D)
---
H
R
67
C
4
UniProt
VAR_006716
R
431
H
THRB_HUMAN
Disease (FA2D)
---
H
R
73
H
5
UniProt
VAR_006717
R
461
W
THRB_HUMAN
Disease (FA2D)
---
H
R
101
W
6
UniProt
VAR_006718
E
509
A
THRB_HUMAN
Disease (FA2D)
---
H
E
146
A
7
UniProt
VAR_068913
E
532
Q
THRB_HUMAN
Polymorphism
---
H
E
164
Q
8
UniProt
VAR_006719
G
601
V
THRB_HUMAN
Disease (FA2D)
---
H
G
226
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (H:16-243)
2: TRYPSIN_HIS (H:53-58)
3: TRYPSIN_SER (H:189-200)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_HUMAN
364-618
1
H:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_HUMAN
402-407
1
H:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_HUMAN
562-573
1
H:189-200
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2feqH02 (H:28-120,H:233-245)
1b: CATH_2feqH01 (H:16-27,H:121-232)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
2feqH02
H:28-120,H:233-245
1b
2feqH01
H:16-27,H:121-232
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Pfam Domains
(0, 0)
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Chain D
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Asymmetric Unit 1
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Asym.Unit (57 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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