PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2FEL
Asym. Unit
Info
Asym.Unit (635 KB)
Biol.Unit 1 (214 KB)
Biol.Unit 2 (215 KB)
Biol.Unit 3 (211 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
3-CARBOXY-CIS,CIS-MUCONATE LACTONIZING ENZYME FROM AGROBACTERIUM RADIOBACTER S2
Authors
:
L. Lehtio, A. Goldman
Date
:
16 Dec 05 (Deposition) - 31 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Biodegradation, Sulphonic Acids, 3-Sulphomuconate, Cycloisomerase, Agrobacterium Radiobacter S2, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Halak, L. Lehtio, T. Basta, S. Burger, M. Contzen, A. Stolz, A. Goldman
Structure And Function Of The 3-Carboxy-Cis, Cis-Muconate Lactonizing Enzyme From The Protocatechuate Degradative Pathway Of Agrobacterium Radiobacter S2.
Febs J. V. 273 5169 2006
[
close entry info
]
Hetero Components
(2, 23)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
11
Ligand/Ion
CHLORIDE ION
2
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH E:1664 , ARG H:155
BINDING SITE FOR RESIDUE CL H 1501
02
AC2
SOFTWARE
HOH F:1621 , ARG G:155
BINDING SITE FOR RESIDUE CL G 1502
03
AC3
SOFTWARE
ARG C:155
BINDING SITE FOR RESIDUE CL D 1503
04
AC4
SOFTWARE
ARG A:155 , HOH B:1622
BINDING SITE FOR RESIDUE CL B 1504
05
AC5
SOFTWARE
ARG E:155
BINDING SITE FOR RESIDUE CL H 1505
06
AC6
SOFTWARE
ARG F:155 , HOH G:1640
BINDING SITE FOR RESIDUE CL G 1506
07
AC7
SOFTWARE
HOH A:1665 , ARG B:155
BINDING SITE FOR RESIDUE CL A 1507
08
AC8
SOFTWARE
HOH C:1658 , ARG D:155
BINDING SITE FOR RESIDUE CL D 1508
09
AC9
SOFTWARE
ARG I:155 , HOH J:1630
BINDING SITE FOR RESIDUE CL I 1509
10
BC1
SOFTWARE
ARG J:155
BINDING SITE FOR RESIDUE CL I 1510
11
BC2
SOFTWARE
ARG K:155
BINDING SITE FOR RESIDUE CL L 1511
12
BC3
SOFTWARE
SER J:25 , ALA J:26 , SER K:2 , PRO K:9
BINDING SITE FOR RESIDUE SO4 K 1601
13
BC4
SOFTWARE
SER A:2 , PRO A:9 , HOH A:1697 , SER D:25 , ALA D:26
BINDING SITE FOR RESIDUE SO4 A 1602
14
BC5
SOFTWARE
SER I:2 , PRO I:9 , SER L:25 , ALA L:26
BINDING SITE FOR RESIDUE SO4 I 1603
15
BC6
SOFTWARE
ALA I:26 , SER L:2 , PRO L:9
BINDING SITE FOR RESIDUE SO4 L 1604
16
BC7
SOFTWARE
SER G:2 , PRO G:9 , HOH G:1656 , SER H:25 , ALA H:26 , HOH H:1700
BINDING SITE FOR RESIDUE SO4 G 1605
17
BC8
SOFTWARE
SER G:25 , ALA G:26 , SER H:2 , PRO H:9 , HOH H:1714
BINDING SITE FOR RESIDUE SO4 H 1606
18
BC9
SOFTWARE
SER E:2 , PRO E:9 , HOH E:1668 , SER F:25 , ALA F:26 , HOH F:1691
BINDING SITE FOR RESIDUE SO4 E 1607
19
CC1
SOFTWARE
SER B:25 , ALA B:26 , SER C:2 , PRO C:9
BINDING SITE FOR RESIDUE SO4 C 1608
20
CC2
SOFTWARE
SER A:25 , ALA A:26 , SER D:2 , PRO D:9 , HOH D:1640
BINDING SITE FOR RESIDUE SO4 D 1609
21
CC3
SOFTWARE
SER B:2 , PRO B:9 , HOH B:1656 , HOH B:1726 , SER C:25 , ALA C:26
BINDING SITE FOR RESIDUE SO4 B 1610
22
CC4
SOFTWARE
SER E:25 , ALA E:26 , SER F:2 , PRO F:9 , HOH F:1649
BINDING SITE FOR RESIDUE SO4 F 1611
23
CC5
SOFTWARE
SER J:2 , PRO J:9 , SER K:25 , ALA K:26 , HOH K:1611
BINDING SITE FOR RESIDUE SO4 J 1612
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (635 KB)
Header - Asym.Unit
Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
Biol.Unit 2 (215 KB)
Header - Biol.Unit 2
Biol.Unit 3 (211 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FEL
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
