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2FEH
Theor. Model
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Theoretical Model (207 KB)
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(1)
Title
:
ANALYSIS OF CGP-3466 DOCKING TO HUMAN PLACENTAL GAPDH
Authors
:
J. L. Jenkins, J. J. Tanner
Date
:
15 Dec 05 (Deposition) - 07 Mar 06 (Release) - 07 Mar 06 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : O,P,Q,R,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Gapdh, Rossmann Fold, Oxidoreductase, Dehydrogenase, Mammalian Gapdh, Gapd, Cgp-3466, Tch-346
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Jenkins, J. J. Tanner
High Resolution Structure Of Human D Glyceraldehyde-3-Phosphate Dehydrogenase
Acta Crystallogr. , Sect. D V. 62 290 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)... (DB0a)
1b: N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)... (DB0b)
1c: N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)... (DB0c)
1d: N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)... (DB0d)
1e: N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)... (DB0e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DB0
5
Ligand/Ion
N-(DIBENZO[B,F]OXEPIN-10-YLMETHYL)-N-METHYL-N-PROP-2-YNYLAMINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018889 (A22G, chain O/P/Q/R, )
2: VAR_049218 (K251N, chain O/P/Q/R, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018889
A
22
G
G3P_HUMAN
Polymorphism
45541435
O/P/Q/R
A
22
G
2
UniProt
VAR_049218
K
251
N
G3P_HUMAN
Polymorphism
1062429
O/P/Q/R
K
251
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (O:150-157,P:150-157,Q:150-157,R:15...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3P_HUMAN
150-157
4
O:150-157
P:150-157
Q:150-157
R:150-157
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Exons
(8, 32)
Info
All Exons
Exon 1.2c (O:3-10 | P:3-10 | Q:3-10 | R:3-10)
Exon 1.4 (O:10-43 | P:10-43 | Q:10-43 | R:10...)
Exon 1.5a (O:44-79 | P:44-79 | Q:44-79 | R:44...)
Exon 1.5g (O:79-109 | P:79-109 | Q:79-109 | R...)
Exon 1.5h (O:110-148 | P:110-148 | Q:110-148 ...)
Exon 1.5j (O:148-175 | P:148-175 | Q:148-175 ...)
Exon 1.5n (O:176-313 | P:176-313 | Q:176-313 ...)
Exon 1.6h (O:313-335 | P:313-335 | Q:313-335 ...)
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All Exon Boundaries
1: Boundary 1.1f/1.2c
2: Boundary 1.2c/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.5g
5: Boundary 1.5g/1.5h
6: Boundary 1.5h/1.5j
7: Boundary 1.5j/1.5n
8: Boundary 1.5n/1.6h
9: Boundary 1.6h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1f
ENST00000396861
1f
ENSE00001526521
chr12:
6643700-6643827
128
G3P_HUMAN
-
0
0
-
-
1.2c
ENST00000396861
2c
ENSE00002166923
chr12:
6643976-6644027
52
G3P_HUMAN
1-10
10
4
O:3-10
P:3-10
Q:3-10
R:3-10
8
8
8
8
1.4
ENST00000396861
4
ENSE00001682256
chr12:
6645660-6645759
100
G3P_HUMAN
10-43
34
4
O:10-43
P:10-43
Q:10-43
R:10-43
34
34
34
34
1.5a
ENST00000396861
5a
ENSE00001675799
chr12:
6645850-6645956
107
G3P_HUMAN
44-79
36
4
O:44-79
P:44-79
Q:44-79
R:44-79
36
36
36
36
1.5g
ENST00000396861
5g
ENSE00001803982
chr12:
6646086-6646176
91
G3P_HUMAN
79-109
31
4
O:79-109
P:79-109
Q:79-109
R:79-109
31
31
31
31
1.5h
ENST00000396861
5h
ENSE00001619556
chr12:
6646267-6646382
116
G3P_HUMAN
110-148
39
4
O:110-148
P:110-148
Q:110-148
R:110-148
39
39
39
39
1.5j
ENST00000396861
5j
ENSE00001763432
chr12:
6646475-6646556
82
G3P_HUMAN
148-175
28
4
O:148-175
P:148-175
Q:148-175
R:148-175
28
28
28
28
1.5n
ENST00000396861
5n
ENSE00000715225
chr12:
6646750-6647162
413
G3P_HUMAN
176-313
138
4
O:176-313
P:176-313
Q:176-313
R:176-313
138
138
138
138
1.6h
ENST00000396861
6h
ENSE00001526518
chr12:
6647267-6647525
259
G3P_HUMAN
313-335
23
4
O:313-335
P:313-335
Q:313-335
R:313-335
23
23
23
23
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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