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2FE8
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (319 KB)
Biol.Unit 5 (162 KB)
Biol.Unit 6 (216 KB)
Biol.Unit 7 (108 KB)
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(1)
Title
:
SARS CORONAVIRUS PAPAIN-LIKE PROTEASE: STRUCTURE OF A VIRAL DEUBIQUITINATING ENZYME
Authors
:
K. Ratia, B. D. Santarsiero, A. D. Mesecar
Date
:
15 Dec 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Biol. Unit 6: A,B (2x)
Biol. Unit 7: B,C (1x)
Keywords
:
Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ratia, K. S. Saikatendu, B. D. Santarsiero, N. Barretto, S. C. Baker, R. C. Stevens, A. D. Mesecar
Severe Acute Respiratory Syndrome Coronavirus Papain-Like Protease: Structure Of A Viral Deubiquitinating Enzyme
Proc. Natl. Acad. Sci. Usa V. 103 5717 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 15)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
9
Ligand/Ion
BROMIDE ION
2
SO4
3
Ligand/Ion
SULFATE ION
3
ZN
3
Ligand/Ion
ZINC ION
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:190 , CYS A:193 , CYS A:225 , CYS A:227
BINDING SITE FOR RESIDUE ZN A 316
02
AC2
SOFTWARE
CYS B:190 , CYS B:193 , CYS B:225 , CYS B:227
BINDING SITE FOR RESIDUE ZN B 316
03
AC3
SOFTWARE
CYS C:190 , CYS C:193 , CYS C:225 , CYS C:227
BINDING SITE FOR RESIDUE ZN C 316
04
AC4
SOFTWARE
PHE A:259 , LEU A:260 , LYS A:307
BINDING SITE FOR RESIDUE BR A 317
05
AC5
SOFTWARE
PHE B:259 , LEU B:260 , LYS B:307
BINDING SITE FOR RESIDUE BR B 317
06
AC6
SOFTWARE
PHE C:259 , LYS C:307
BINDING SITE FOR RESIDUE BR C 317
07
AC7
SOFTWARE
LYS A:127 , PHE A:128 , GLN A:134
BINDING SITE FOR RESIDUE BR A 318
08
AC8
SOFTWARE
LYS B:127 , PHE B:128 , HOH B:373
BINDING SITE FOR RESIDUE BR B 318
09
AC9
SOFTWARE
PHE C:128
BINDING SITE FOR RESIDUE BR C 318
10
BC1
SOFTWARE
SER A:86 , ALA A:87 , VAL A:160
BINDING SITE FOR RESIDUE BR A 319
11
BC2
SOFTWARE
SER B:86 , ALA B:87 , VAL B:160 , HOH B:395
BINDING SITE FOR RESIDUE BR B 319
12
BC3
SOFTWARE
ALA C:87 , VAL C:160
BINDING SITE FOR RESIDUE BR C 319
13
BC4
SOFTWARE
HIS A:74 , ASN A:129 , GLN A:175 , HIS A:176 , HOH A:375
BINDING SITE FOR RESIDUE SO4 A 320
14
BC5
SOFTWARE
HIS B:74 , ASN B:129 , GLN B:175 , HIS B:176 , HOH B:440
BINDING SITE FOR RESIDUE SO4 B 320
15
BC6
SOFTWARE
HIS C:74 , ASN C:129 , GLN C:175 , HIS C:176 , HOH C:335 , HOH C:462
BINDING SITE FOR RESIDUE SO4 C 320
[
close Site info
]
SAPs(SNPs)/Variants
(10, 30)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_R1AB_CVHSA_022 (M24K, chain A/B/C, )
02: VAR_R1A_CVHSA_022 (M24K, chain A/B/C, )
03: VAR_R1AB_CVHSA_023 (L124I, chain A/B/C, )
04: VAR_R1A_CVHSA_023 (L124I, chain A/B/C, )
05: VAR_R1AB_CVHSA_024 (I223L, chain A/B/C, )
06: VAR_R1A_CVHSA_024 (I223L, chain A/B/C, )
07: VAR_R1AB_CVHSA_025 (E251G, chain A/B/C, )
08: VAR_R1A_CVHSA_025 (E251G, chain A/B/C, )
09: VAR_R1AB_CVHSA_026 (G267V, chain A/B/C, )
10: VAR_R1A_CVHSA_026 (G267V, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_R1AB_CVHSA_022
*
M
1563
K
R1AB_CVHSA
---
---
A/B/C
M
24
K
02
UniProt
VAR_R1A_CVHSA_022
*
M
1563
K
R1A_CVHSA
---
---
A/B/C
M
24
K
03
UniProt
VAR_R1AB_CVHSA_023
*
L
1663
I
R1AB_CVHSA
---
---
A/B/C
L
124
I
04
UniProt
VAR_R1A_CVHSA_023
*
L
1663
I
R1A_CVHSA
---
---
A/B/C
L
124
I
05
UniProt
VAR_R1AB_CVHSA_024
*
I
1762
L
R1AB_CVHSA
---
---
A/B/C
I
223
L
06
UniProt
VAR_R1A_CVHSA_024
*
I
1762
L
R1A_CVHSA
---
---
A/B/C
I
223
L
07
UniProt
VAR_R1AB_CVHSA_025
*
E
1790
G
R1AB_CVHSA
---
---
A/B/C
E
251
G
08
UniProt
VAR_R1A_CVHSA_025
*
E
1790
G
R1A_CVHSA
---
---
A/B/C
E
251
G
09
UniProt
VAR_R1AB_CVHSA_026
*
G
1806
V
R1AB_CVHSA
---
---
A/B/C
G
267
V
10
UniProt
VAR_R1A_CVHSA_026
*
G
1806
V
R1A_CVHSA
---
---
A/B/C
G
267
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_C16 (A:72-315,B:72-314,C:72-313,A:72-31...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_C16
PS51124
Peptidase family C16 domain profile.
R1A_CVHSA
1611-1875
3
A:72-315
B:72-314
C:72-313
R1AB_CVHSA
1611-1875
3
A:72-315
B:72-314
C:72-313
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (166 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (56 KB)
Header - Biol.Unit 3
Biol.Unit 4 (319 KB)
Header - Biol.Unit 4
Biol.Unit 5 (162 KB)
Header - Biol.Unit 5
Biol.Unit 6 (216 KB)
Header - Biol.Unit 6
Biol.Unit 7 (108 KB)
Header - Biol.Unit 7
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