PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2FC7
Asym. Unit
Info
Asym.Unit (393 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZZ DOMAIN OF ZZZ3 PROTEIN
Authors
:
W. Dang, Y. Muto, M. Inoue, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
12 Dec 05 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structure Genomics, Zz Domain, Zzz3 Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Dang, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of The Zz Domain Of Zzz3 Protein
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:24 , CYS A:27 , CYS A:51 , CYS A:54
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:39 , CYS A:42 , HIS A:64 , HIS A:68
BINDING SITE FOR RESIDUE ZN A 401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HTH_MYB (A:7-7)
2: ZF_ZZ_2 (A:18-54)
3: ZF_ZZ_1 (A:24-54)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_MYB
PS51294
Myb-type HTH DNA-binding domain profile.
ZZZ3_HUMAN
647-707
1
A:7-7
2
ZF_ZZ_2
PS50135
Zinc finger ZZ-type profile.
ZZZ3_HUMAN
817-853
1
A:18-54
3
ZF_ZZ_1
PS01357
Zinc finger ZZ-type signature.
ZZZ3_HUMAN
823-853
1
A:24-54
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.11a (A:1-6)
Exon 1.15 (A:8-23)
Exon 1.16 (A:24-57)
Exon 1.17c (A:57-82 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11a
2: Boundary 1.11a/1.12b
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17c
6: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000370801
2b
ENSE00001374496
chr1:
78148343-78148270
74
ZZZ3_HUMAN
-
0
0
-
-
1.4
ENST00000370801
4
ENSE00001381493
chr1:
78107340-78107207
134
ZZZ3_HUMAN
-
0
0
-
-
1.5a
ENST00000370801
5a
ENSE00001372837
chr1:
78107131-78107069
63
ZZZ3_HUMAN
-
0
0
-
-
1.6
ENST00000370801
6
ENSE00002161656
chr1:
78105287-78105134
154
ZZZ3_HUMAN
-
0
0
-
-
1.7d
ENST00000370801
7d
ENSE00001453662
chr1:
78099090-78097535
1556
ZZZ3_HUMAN
1-502
502
0
-
-
1.9
ENST00000370801
9
ENSE00001184000
chr1:
78050340-78050202
139
ZZZ3_HUMAN
502-548
47
0
-
-
1.10
ENST00000370801
10
ENSE00001183997
chr1:
78047811-78047664
148
ZZZ3_HUMAN
549-598
50
0
-
-
1.11a
ENST00000370801
11a
ENSE00001183994
chr1:
78047576-78047461
116
ZZZ3_HUMAN
598-636
39
1
A:1-6
6
1.12b
ENST00000370801
12b
ENSE00001317615
chr1:
78046754-78046683
72
ZZZ3_HUMAN
637-660
24
0
-
-
1.12d
ENST00000370801
12d
ENSE00001184005
chr1:
78045313-78045212
102
ZZZ3_HUMAN
661-694
34
0
-
-
1.13
ENST00000370801
13
ENSE00001066865
chr1:
78044554-78044459
96
ZZZ3_HUMAN
695-726
32
0
-
-
1.14
ENST00000370801
14
ENSE00001066866
chr1:
78041905-78041753
153
ZZZ3_HUMAN
727-777
51
0
-
-
1.15
ENST00000370801
15
ENSE00001013626
chr1:
78034151-78034017
135
ZZZ3_HUMAN
778-822
45
1
A:8-23
16
1.16
ENST00000370801
16
ENSE00001013627
chr1:
78031866-78031766
101
ZZZ3_HUMAN
823-856
34
1
A:24-57
34
1.17c
ENST00000370801
17c
ENSE00001859472
chr1:
78031469-78030185
1285
ZZZ3_HUMAN
856-903
48
1
A:57-82 (gaps)
37
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fc7a1 (A:8-76)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
RING/U-box
(48)
Superfamily
:
RING/U-box
(48)
Family
:
ZZ domain
(3)
Protein domain
:
Zinc finger ZZ-type-containing protein 3, ZZZ3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2fc7a1
A:8-76
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (393 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FC7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
