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Getting 'Biological Unit' information from database.
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Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
WRN EXONUCLEASE, EU COMPLEX
Authors
:
J. J. Perry
Date
:
10 Dec 05 (Deposition) - 25 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Recq, Wrn, Werner Syndrome, 3'-5' Exonuclease, Dnaq Family, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Perry, S. M. Yannone, L. G. Holden, C. Hitomi, A. Asaithamby, S. Han, P. K. Cooper, D. J. Chen, J. A. Tainer
Wrn Exonuclease Structure And Molecular Mechanism Imply An Editing Role In Dna End Processing.
Nat. Struct. Mol. Biol. V. 13 414 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: EUROPIUM (III) ION (EU3a)
1b: EUROPIUM (III) ION (EU3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EU3
2
Ligand/Ion
EUROPIUM (III) ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:82 , GLU A:84 , ASP A:216 , EU3 A:238 , HOH A:327 , HOH A:346
BINDING SITE FOR RESIDUE EU3 A 237
2
AC2
SOFTWARE
ASP A:82 , EU3 A:237 , HOH A:327 , HOH A:346 , HOH A:349
BINDING SITE FOR RESIDUE EU3 A 238
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036318 (G92V, chain A, )
2: VAR_WRN_HUMAN_CCDS6082_1_01 (G92V, chain A, )
3: VAR_017454 (V114I, chain A, )
4: VAR_026588 (K125N, chain A, )
5: VAR_026589 (K135E, chain A, )
6: VAR_017455 (T172P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036318
G
92
V
WRN_HUMAN
Unclassified
---
A
G
92
V
2
CancerSNP
VAR_WRN_HUMAN_CCDS6082_1_01
*
G
92
V
WRN_HUMAN
Disease (Colorectal cancer)
---
A
G
92
V
3
UniProt
VAR_017454
V
114
I
WRN_HUMAN
Polymorphism
2230009
A
V
114
I
4
UniProt
VAR_026588
K
125
N
WRN_HUMAN
Disease (WRN)
---
A
K
125
N
5
UniProt
VAR_026589
K
135
E
WRN_HUMAN
Disease (WRN)
---
A
K
135
E
6
UniProt
VAR_017455
T
172
P
WRN_HUMAN
Unclassified
---
A
T
172
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.3 (A:36-70)
Exon 1.4 (A:70-119)
Exon 1.5 (A:119-168)
Exon 1.6 (A:169-218)
Exon 1.7 (A:219-231)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000298139
1
ENSE00001158217
chr8:
30891317-30891489
173
WRN_HUMAN
-
0
0
-
-
1.2
ENST00000298139
2
ENSE00001092693
chr8:
30915888-30916059
172
WRN_HUMAN
1-32
32
0
-
-
1.3
ENST00000298139
3
ENSE00001092694
chr8:
30916669-30916781
113
WRN_HUMAN
33-70
38
1
A:36-70
35
1.4
ENST00000298139
4
ENSE00001092733
chr8:
30921805-30921950
146
WRN_HUMAN
70-119
50
1
A:70-119
50
1.5
ENST00000298139
5
ENSE00001092708
chr8:
30922431-30922579
149
WRN_HUMAN
119-168
50
1
A:119-168
50
1.6
ENST00000298139
6
ENSE00001158180
chr8:
30924549-30924698
150
WRN_HUMAN
169-218
50
1
A:169-218
50
1.7
ENST00000298139
7
ENSE00001092732
chr8:
30925774-30925843
70
WRN_HUMAN
219-242
24
1
A:219-231
13
1.8
ENST00000298139
8
ENSE00001092711
chr8:
30933689-30933803
115
WRN_HUMAN
242-280
39
0
-
-
1.9
ENST00000298139
9
ENSE00001092739
chr8:
30938383-30938812
430
WRN_HUMAN
280-423
144
0
-
-
1.10
ENST00000298139
10
ENSE00001687979
chr8:
30941215-30941295
81
WRN_HUMAN
424-450
27
0
-
-
1.11
ENST00000298139
11
ENSE00001620781
chr8:
30942682-30942762
81
WRN_HUMAN
451-477
27
0
-
-
1.12b
ENST00000298139
12b
ENSE00001092740
chr8:
30945292-30945436
145
WRN_HUMAN
478-526
49
0
-
-
1.13
ENST00000298139
13
ENSE00001092713
chr8:
30946406-30946481
76
WRN_HUMAN
526-551
26
0
-
-
1.14
ENST00000298139
14
ENSE00001092701
chr8:
30947981-30948048
68
WRN_HUMAN
551-574
24
0
-
-
1.15
ENST00000298139
15
ENSE00001092742
chr8:
30948350-30948458
109
WRN_HUMAN
574-610
37
0
-
-
1.16
ENST00000298139
16
ENSE00001092728
chr8:
30949346-30949414
69
WRN_HUMAN
610-633
24
0
-
-
1.17
ENST00000298139
17
ENSE00001092724
chr8:
30954284-30954366
83
WRN_HUMAN
633-661
29
0
-
-
1.18
ENST00000298139
18
ENSE00001092707
chr8:
30958365-30958471
107
WRN_HUMAN
661-696
36
0
-
-
1.19
ENST00000298139
19
ENSE00001092734
chr8:
30969131-30969315
185
WRN_HUMAN
697-758
62
0
-
-
1.20
ENST00000298139
20
ENSE00001157714
chr8:
30973870-30974044
175
WRN_HUMAN
758-816
59
0
-
-
1.21b
ENST00000298139
21b
ENSE00001092705
chr8:
30977759-30977940
182
WRN_HUMAN
817-877
61
0
-
-
1.22
ENST00000298139
22
ENSE00001092726
chr8:
30982038-30982139
102
WRN_HUMAN
877-911
35
0
-
-
1.23b
ENST00000298139
23b
ENSE00001092703
chr8:
30982424-30982516
93
WRN_HUMAN
911-942
32
0
-
-
1.24
ENST00000298139
24
ENSE00001092719
chr8:
30989881-30990022
142
WRN_HUMAN
942-989
48
0
-
-
1.25
ENST00000298139
25
ENSE00001092735
chr8:
30998946-30999116
171
WRN_HUMAN
990-1046
57
0
-
-
1.26
ENST00000298139
26
ENSE00001157686
chr8:
30999197-30999291
95
WRN_HUMAN
1047-1078
32
0
-
-
1.27
ENST00000298139
27
ENSE00001092700
chr8:
31000142-31000217
76
WRN_HUMAN
1078-1103
26
0
-
-
1.28
ENST00000298139
28
ENSE00001092709
chr8:
31001066-31001139
74
WRN_HUMAN
1104-1128
25
0
-
-
1.29
ENST00000298139
29
ENSE00001092691
chr8:
31004569-31004644
76
WRN_HUMAN
1128-1153
26
0
-
-
1.30
ENST00000298139
30
ENSE00001092702
chr8:
31004880-31004992
113
WRN_HUMAN
1154-1191
38
0
-
-
1.31
ENST00000298139
31
ENSE00001092715
chr8:
31007857-31007971
115
WRN_HUMAN
1191-1229
39
0
-
-
1.32
ENST00000298139
32
ENSE00001092722
chr8:
31012140-31012271
132
WRN_HUMAN
1230-1273
44
0
-
-
1.33
ENST00000298139
33
ENSE00001092710
chr8:
31014884-31015046
163
WRN_HUMAN
1274-1328
55
0
-
-
1.34
ENST00000298139
34
ENSE00001092695
chr8:
31024538-31024746
209
WRN_HUMAN
1328-1397
70
0
-
-
1.35b
ENST00000298139
35b
ENSE00002115515
chr8:
31030511-31031285
775
WRN_HUMAN
1398-1432
35
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
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