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Getting 'Exon' information from database.
2F9Q
Asym. Unit
Info
Asym.Unit (296 KB)
Biol.Unit 1 (285 KB)
Biol.Unit 2 (285 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CYTOCHROME P450 2D6
Authors
:
P. Rowland
Date
:
06 Dec 05 (Deposition) - 20 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Cytochrome P450 2D6; Haem, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Rowland, F. E. Blaney, M. G. Smyth, J. J. Jones, V. R. Leydon, A. K. Oxbrow, C. J. Lewis, M. G. Tennant, S. Modi, D. S. Eggleston, R. J. Chenery, A. M. Bridges
Crystal Structure Of Human Cytochrome P450 2D6
J. Biol. Chem. V. 281 7614 2006
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:129 , ARG B:133 , ARG D:129 , ARG D:133
BINDING SITE FOR RESIDUE SO4 B 2000
2
AC2
SOFTWARE
ARG B:129 , ARG B:133 , ARG B:440 , ARG D:129 , ARG D:133 , ARG D:440
BINDING SITE FOR RESIDUE SO4 B 2001
3
AC3
SOFTWARE
ARG A:101 , VAL A:119 , PHE A:120 , TRP A:128 , ARG A:132 , ALA A:305 , GLY A:306 , THR A:309 , THR A:310 , THR A:313 , GLN A:364 , HIS A:376 , PRO A:435 , PHE A:436 , SER A:437 , ARG A:441 , CYS A:443 , LEU A:444 , GLY A:445 , GLU A:452
BINDING SITE FOR RESIDUE HEM A 600
4
AC4
SOFTWARE
ARG B:101 , VAL B:119 , PHE B:120 , TRP B:128 , ARG B:132 , ALA B:305 , GLY B:306 , THR B:309 , THR B:310 , HIS B:376 , PRO B:435 , PHE B:436 , SER B:437 , ARG B:441 , CYS B:443 , LEU B:444 , GLY B:445
BINDING SITE FOR RESIDUE HEM B 600
5
AC5
SOFTWARE
ARG C:101 , VAL C:119 , PHE C:120 , TRP C:128 , ARG C:132 , ALA C:305 , GLY C:306 , THR C:309 , THR C:310 , THR C:313 , HIS C:376 , PRO C:435 , PHE C:436 , SER C:437 , ARG C:441 , CYS C:443 , LEU C:444 , GLY C:445 , GLU C:452
BINDING SITE FOR RESIDUE HEM C 600
6
AC6
SOFTWARE
ARG D:101 , VAL D:119 , PHE D:120 , TRP D:128 , ARG D:132 , LEU D:302 , ALA D:305 , GLY D:306 , THR D:309 , THR D:310 , THR D:313 , HIS D:376 , PRO D:435 , PHE D:436 , SER D:437 , ARG D:441 , CYS D:443 , LEU D:444 , GLY D:445 , GLU D:452
BINDING SITE FOR RESIDUE HEM D 600
[
close Site info
]
SAPs(SNPs)/Variants
(43, 172)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_008336 (P34S, chain A/B/C/D, )
02: VAR_008369 (A85V, chain A/B/C/D, )
03: VAR_024720 (L91M, chain A/B/C/D, )
04: VAR_024721 (H94R, chain A/B/C/D, )
05: VAR_072766 (V104A, chain A/B/C/D, )
06: VAR_008337 (T107I, chain A/B/C/D, )
07: VAR_024722 (F120I, chain A/B/C/D, )
08: VAR_072767 (L142S, chain A/B/C/D, )
09: VAR_072768 (K147R, chain A/B/C/D, )
10: VAR_024723 (E155K, chain A/B/C/D, )
11: VAR_072769 (C161S, chain A/B/C/D, )
12: VAR_072770 (F164L, chain A/B/C/D, )
13: VAR_008338 (G169R, chain A/B/C/D, )
14: VAR_008339 (G212E, chain A/B/C/D, )
15: VAR_072771 (E215K, chain A/B/C/D, )
16: VAR_072772 (F219S, chain A/B/C/D, )
17: VAR_045679 (R231P, chain A/B/C/D, )
18: VAR_008370 (A237S, chain A/B/C/D, )
19: VAR_072773 (T249P, chain A/B/C/D, )
20: VAR_008340 (R296C, chain A/B/C/D, )
21: VAR_008371 (I297L, chain A/B/C/D, )
22: VAR_045680 (A300G, chain A/B/C/D, )
23: VAR_014633 (S311L, chain A/B/C/D, )
24: VAR_008348 (H324P, chain A/B/C/D, )
25: VAR_072774 (V327M, chain A/B/C/D, )
26: VAR_059150 (R329L, chain A/B/C/D, )
27: VAR_072775 (D336N, chain A/B/C/D, )
28: VAR_072776 (D337G, chain A/B/C/D, )
29: VAR_072777 (V342M, chain A/B/C/D, )
30: VAR_008372 (R343G, chain A/B/C/D, )
31: VAR_072778 (R344Q, chain A/B/C/D, )
32: VAR_045681 (R365H, chain A/B/C/D, )
33: VAR_008373 (I369T, chain A/B/C/D, )
34: VAR_059151 (G373S, chain A/B/C/D, )
35: VAR_008374 (E410K, chain A/B/C/D, )
36: VAR_024724 (E418K, chain A/B/C/D, )
37: VAR_072779 (R440C, chain A/B/C/D, )
38: VAR_072780 (F457L, chain A/B/C/D, )
39: VAR_072781 (H463D, chain A/B/C/D, )
40: VAR_024725 (P469A, chain A/B/C/D, )
41: VAR_024726 (H478Y, chain A/B/C/D, )
42: VAR_008341 (S486T, chain A/B/C/D, )
43: VAR_072782 (R497C, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_008336
P
34
S
CP2D6_HUMAN
Polymorphism
1065852
A/B/C/D
P
34
S
02
UniProt
VAR_008369
A
85
V
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
A
85
V
03
UniProt
VAR_024720
L
91
M
CP2D6_HUMAN
Polymorphism
28371703
A/B/C/D
L
91
M
04
UniProt
VAR_024721
H
94
R
CP2D6_HUMAN
Polymorphism
28371704
A/B/C/D
H
94
R
05
UniProt
VAR_072766
V
104
A
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
V
104
A
06
UniProt
VAR_008337
T
107
I
CP2D6_HUMAN
Polymorphism
28371706
A/B/C/D
T
107
I
07
UniProt
VAR_024722
F
120
I
CP2D6_HUMAN
Polymorphism
1135822
A/B/C/D
F
120
I
08
UniProt
VAR_072767
L
142
S
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
L
142
S
09
UniProt
VAR_072768
K
147
R
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
K
147
R
10
UniProt
VAR_024723
E
155
K
CP2D6_HUMAN
Polymorphism
28371710
A/B/C/D
E
155
K
11
UniProt
VAR_072769
C
161
S
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
C
161
S
12
UniProt
VAR_072770
F
164
L
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
F
164
L
13
UniProt
VAR_008338
G
169
R
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
G
169
R
14
UniProt
VAR_008339
G
212
E
CP2D6_HUMAN
Polymorphism
5030866
A/B/C/D
G
212
E
15
UniProt
VAR_072771
E
215
K
CP2D6_HUMAN
Unclassified
---
A/B/C/D
E
215
K
16
UniProt
VAR_072772
F
219
S
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
F
219
S
17
UniProt
VAR_045679
L
231
P
CP2D6_HUMAN
Polymorphism
17002853
A/B/C/D
R
231
P
18
UniProt
VAR_008370
A
237
S
CP2D6_HUMAN
Polymorphism
28371717
A/B/C/D
A
237
S
19
UniProt
VAR_072773
T
249
P
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
T
249
P
20
UniProt
VAR_008340
R
296
C
CP2D6_HUMAN
Polymorphism
16947
A/B/C/D
R
296
C
21
UniProt
VAR_008371
I
297
L
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
I
297
L
22
UniProt
VAR_045680
A
300
G
CP2D6_HUMAN
Polymorphism
1058170
A/B/C/D
A
300
G
23
UniProt
VAR_014633
S
311
L
CP2D6_HUMAN
Polymorphism
1800754
A/B/C/D
S
311
L
24
UniProt
VAR_008348
H
324
P
CP2D6_HUMAN
Polymorphism
5030867
A/B/C/D
H
324
P
25
UniProt
VAR_072774
V
327
M
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
V
327
M
26
UniProt
VAR_059150
R
329
L
CP2D6_HUMAN
Polymorphism
3915951
A/B/C/D
R
329
L
27
UniProt
VAR_072775
D
336
N
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
D
336
N
28
UniProt
VAR_072776
D
337
G
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
D
337
G
29
UniProt
VAR_072777
V
342
M
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
V
342
M
30
UniProt
VAR_008372
R
343
G
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
R
343
G
31
UniProt
VAR_072778
R
344
Q
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
R
344
Q
32
UniProt
VAR_045681
R
365
H
CP2D6_HUMAN
Polymorphism
1058172
A/B/C/D
R
365
H
33
UniProt
VAR_008373
I
369
T
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
I
369
T
34
UniProt
VAR_059151
G
373
S
CP2D6_HUMAN
Polymorphism
2856959
A/B/C/D
G
373
S
35
UniProt
VAR_008374
E
410
K
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
E
410
K
36
UniProt
VAR_024724
E
418
K
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
E
418
K
37
UniProt
VAR_072779
R
440
C
CP2D6_HUMAN
Unclassified
---
A/B/C/D
R
440
C
38
UniProt
VAR_072780
F
457
L
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
F
457
L
39
UniProt
VAR_072781
H
463
D
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
H
463
D
40
UniProt
VAR_024725
P
469
A
CP2D6_HUMAN
Polymorphism
1135833
A/B/C/D
P
469
A
41
UniProt
VAR_024726
H
478
Y
CP2D6_HUMAN
Polymorphism
28371735
A/B/C/D
H
478
Y
42
UniProt
VAR_008341
S
486
T
CP2D6_HUMAN
Polymorphism
1135840
A/B/C/D
S
486
T
43
UniProt
VAR_072782
R
497
C
CP2D6_HUMAN
Polymorphism
---
A/B/C/D
R
497
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:436-445,B:436-445,C:436-445,D:43...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2D6_HUMAN
436-445
4
A:436-445
B:436-445
C:436-445
D:436-445
[
close PROSITE info
]
Exons
(9, 36)
Info
All Exons
Exon 1.1a (A:34-60 (gaps) | B:34-60 (gaps) | ...)
Exon 1.1g (A:61-118 | B:61-118 | C:61-118 | D...)
Exon 1.3b (A:118-169 | B:118-169 | C:118-169 ...)
Exon 1.4b (A:169-222 | B:169-222 | C:169-222 ...)
Exon 1.5 (A:223-281 | B:223-281 | C:223-281 ...)
Exon 1.6a (A:282-329 | B:282-329 | C:282-329 ...)
Exon 1.8b (A:329-391 | B:329-391 | C:329-391 ...)
Exon 1.9 (A:392-439 | B:392-439 | C:392-439 ...)
Exon 1.10d (A:439-497 | B:439-497 | C:439-497 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.1g
03: Boundary 1.1g/1.3b
04: Boundary 1.3b/1.4b
05: Boundary 1.4b/1.5
06: Boundary 1.5/1.6a
07: Boundary 1.6a/1.8b
08: Boundary 1.8b/1.9
09: Boundary 1.9/1.10d
10: Boundary 1.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000360608
1a
ENSE00001877348
chr22:
42526908-42526614
295
CP2D6_HUMAN
1-60
60
4
A:34-60 (gaps)
B:34-60 (gaps)
C:34-60 (gaps)
D:34-60 (gaps)
27
27
27
27
1.1g
ENST00000360608
1g
ENSE00001687273
chr22:
42525911-42525740
172
CP2D6_HUMAN
61-118
58
4
A:61-118
B:61-118
C:61-118
D:61-118
58
58
58
58
1.3b
ENST00000360608
3b
ENSE00001624395
chr22:
42525187-42525035
153
CP2D6_HUMAN
118-169
52
4
A:118-169
B:118-169
C:118-169
D:118-169
52
52
52
52
1.4b
ENST00000360608
4b
ENSE00001692653
chr22:
42524946-42524786
161
CP2D6_HUMAN
169-222
54
4
A:169-222
B:169-222
C:169-222
D:169-222
54
54
54
54
1.5
ENST00000360608
5
ENSE00001615055
chr22:
42524352-42524176
177
CP2D6_HUMAN
223-281
59
4
A:223-281
B:223-281
C:223-281
D:223-281
59
59
59
59
1.6a
ENST00000360608
6a
ENSE00001669472
chr22:
42523985-42523844
142
CP2D6_HUMAN
282-329
48
4
A:282-329
B:282-329
C:282-329
D:282-329
48
48
48
48
1.8b
ENST00000360608
8b
ENSE00001664789
chr22:
42523636-42523449
188
CP2D6_HUMAN
329-391
63
4
A:329-391
B:329-391
C:329-391
D:329-391
63
63
63
63
1.9
ENST00000360608
9
ENSE00001644816
chr22:
42522994-42522853
142
CP2D6_HUMAN
392-439
48
4
A:392-439
B:392-439
C:392-439
D:392-439
48
48
48
48
1.10d
ENST00000360608
10d
ENSE00001885585
chr22:
42522754-42522501
254
CP2D6_HUMAN
439-497
59
4
A:439-497
B:439-497
C:439-497
D:439-497
59
59
59
59
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2f9qB00 (B:34-497)
1b: CATH_2f9qD00 (D:34-497)
1c: CATH_2f9qA00 (A:34-497)
1d: CATH_2f9qC00 (C:34-497)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Human (Homo sapiens)
(32)
1a
2f9qB00
B:34-497
1b
2f9qD00
D:34-497
1c
2f9qA00
A:34-497
1d
2f9qC00
C:34-497
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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(currently selected atoms:
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