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2F9J
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
3.0 ANGSTROM RESOLUTION STRUCTURE OF A Y22M MUTANT OF THE SPLICEOSOMAL PROTEIN P14 BOUND TO A REGION OF SF3B155
Authors
:
M. J. Schellenberg, A. M. Macmillan
Date
:
06 Dec 05 (Deposition) - 24 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Keywords
:
Sf3Bp14 Sf3B155 Sap155 P14Y22M Rrm, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, R. A. Edwards, D. B. Ritchie, O. A. Kent, M. M. Golas H. Stark, J. N. M. Glover, A. M. Macmillan
Crystal Structure Of A Core Spliceosomal Protein Interface
Proc. Natl. Acad. Sci. Usa V. 103 1266 2006
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:19-94,B:19-94)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SF3B6_HUMAN
19-94
2
A:19-94
B:19-94
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Exons
(5, 10)
Info
All Exons
Exon 1.2a (A:12-50 | B:12-50)
Exon 1.3 (A:50-96 | B:50-96)
Exon 1.4 (A:97-125 | B:97-125)
Exon 2.8a (P:381-413 | Q:389-413)
Exon 2.9 (P:414-415 | Q:414-415)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/-
5: Boundary 2.7b/2.8a
6: Boundary 2.8a/2.9
7: Boundary 2.9/2.10
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000233468
1a
ENSE00001034726
chr2:
24299313-24299070
244
SF3B6_HUMAN
1-10
10
0
-
-
1.2a
ENST00000233468
2a
ENSE00000721455
chr2:
24297064-24296946
119
SF3B6_HUMAN
11-50
40
2
A:12-50
B:12-50
39
39
1.3
ENST00000233468
3
ENSE00000721450
chr2:
24291329-24291191
139
SF3B6_HUMAN
50-96
47
2
A:50-96
B:50-96
47
47
1.4
ENST00000233468
4
ENSE00000808827
chr2:
24290721-24290454
268
SF3B6_HUMAN
97-125
29
2
A:97-125
B:97-125
29
29
2.1a
ENST00000335508
1a
ENSE00001858642
chr2:
198299815-198299696
120
SF3B1_HUMAN
1-10
10
0
-
-
2.2b
ENST00000335508
2b
ENSE00001005134
chr2:
198288698-198288532
167
SF3B1_HUMAN
10-65
56
0
-
-
2.3
ENST00000335508
3
ENSE00001779244
chr2:
198285857-198285753
105
SF3B1_HUMAN
66-100
35
0
-
-
2.4a
ENST00000335508
4a
ENSE00000784199
chr2:
198285266-198285152
115
SF3B1_HUMAN
101-139
39
0
-
-
2.4h
ENST00000335508
4h
ENSE00000784198
chr2:
198283312-198283233
80
SF3B1_HUMAN
139-165
27
0
-
-
2.5b
ENST00000335508
5b
ENSE00000784196
chr2:
198281635-198281465
171
SF3B1_HUMAN
166-222
57
0
-
-
2.6b
ENST00000335508
6b
ENSE00000964860
chr2:
198274731-198274494
238
SF3B1_HUMAN
223-302
80
0
-
-
2.7b
ENST00000335508
7b
ENSE00000964861
chr2:
198273305-198273093
213
SF3B1_HUMAN
302-373
72
0
-
-
2.8a
ENST00000335508
8a
ENSE00000964862
chr2:
198272843-198272722
122
SF3B1_HUMAN
373-413
41
2
P:381-413
Q:389-413
33
25
2.9
ENST00000335508
9
ENSE00000964863
chr2:
198270196-198269999
198
SF3B1_HUMAN
414-479
66
2
P:414-415
Q:414-415
2
2
2.10
ENST00000335508
10
ENSE00000964864
chr2:
198269901-198269800
102
SF3B1_HUMAN
480-513
34
0
-
-
2.11
ENST00000335508
11
ENSE00000964865
chr2:
198268488-198268309
180
SF3B1_HUMAN
514-573
60
0
-
-
2.12
ENST00000335508
12
ENSE00000964866
chr2:
198267759-198267673
87
SF3B1_HUMAN
574-602
29
0
-
-
2.13
ENST00000335508
13
ENSE00000964867
chr2:
198267550-198267280
271
SF3B1_HUMAN
603-693
91
0
-
-
2.15b
ENST00000335508
15b
ENSE00000964868
chr2:
198266854-198266709
146
SF3B1_HUMAN
693-741
49
0
-
-
2.16
ENST00000335508
16
ENSE00000964869
chr2:
198266612-198266466
147
SF3B1_HUMAN
742-790
49
0
-
-
2.17
ENST00000335508
17
ENSE00000964870
chr2:
198266249-198266124
126
SF3B1_HUMAN
791-832
42
0
-
-
2.18
ENST00000335508
18
ENSE00000964871
chr2:
198265660-198265439
222
SF3B1_HUMAN
833-906
74
0
-
-
2.19
ENST00000335508
19
ENSE00000964872
chr2:
198265158-198264976
183
SF3B1_HUMAN
907-967
61
0
-
-
2.20
ENST00000335508
20
ENSE00000964873
chr2:
198264890-198264779
112
SF3B1_HUMAN
968-1005
38
0
-
-
2.22b
ENST00000335508
22b
ENSE00000964874
chr2:
198263305-198263185
121
SF3B1_HUMAN
1005-1045
41
0
-
-
2.23a
ENST00000335508
23a
ENSE00000964875
chr2:
198262840-198262709
132
SF3B1_HUMAN
1045-1089
45
0
-
-
2.24
ENST00000335508
24
ENSE00000784174
chr2:
198261052-198260780
273
SF3B1_HUMAN
1089-1180
92
0
-
-
2.25c
ENST00000335508
25c
ENSE00000964876
chr2:
198257912-198257696
217
SF3B1_HUMAN
1180-1252
73
0
-
-
2.26b
ENST00000335508
26b
ENSE00001337127
chr2:
198257185-198256698
488
SF3B1_HUMAN
1253-1304
52
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2f9ja1 (A:12-125)
1b: SCOP_d2f9jb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Pre-mRNA branch site protein p14
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2f9ja1
A:12-125
1b
d2f9jb_
B:
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Pfam Domains
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Asym.Unit (55 KB)
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