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Getting 'Exon' information from database.
2F8X
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACTIVATED NOTCH, CSL AND MAML ON HES-1 PROMOTER DNA SEQUENCE
Authors
:
Y. Nam, P. Sliz, S. C. Blacklow
Date
:
04 Dec 05 (Deposition) - 04 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : C,K,M,X,Y
Biol. Unit 1: C,K,M,X,Y (1x)
Keywords
:
Notch, Csl, Mastermind, Hes-1, Ankyrin Repeats, Rel- Homology Region, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nam, P. Sliz, L. Song, J. C. Aster, S. C. Blacklow
Structural Basis For Cooperativity In Recruitment Of Maml Coactivators To Notch Transcription Complexes.
Cell(Cambridge, Mass. ) V. 124 973 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068929 (E49G, chain C, )
2: VAR_068930 (K155E, chain C, )
3: VAR_028994 (K277E, chain C, )
4: VAR_057243 (M282K, chain C, )
5: VAR_028995 (D320H, chain C, )
6: VAR_057244 (I394V, chain C, )
7: VAR_028996 (R405Q, chain C, )
8: VAR_028997 (P411S, chain C, )
9: VAR_071962 (D1990N, chain K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068929
E
63
G
SUH_HUMAN
Disease (AOS3)
---
C
E
49
G
2
UniProt
VAR_068930
K
169
E
SUH_HUMAN
Disease (AOS3)
---
C
K
155
E
3
UniProt
VAR_028994
K
291
E
SUH_HUMAN
Polymorphism
1064372
C
K
277
E
4
UniProt
VAR_057243
M
296
K
SUH_HUMAN
Polymorphism
5011135
C
M
282
K
5
UniProt
VAR_028995
D
334
H
SUH_HUMAN
Polymorphism
1064376
C
D
320
H
6
UniProt
VAR_057244
I
408
V
SUH_HUMAN
Polymorphism
1064381
C
I
394
V
7
UniProt
VAR_028996
R
419
Q
SUH_HUMAN
Polymorphism
1064384
C
R
405
Q
8
UniProt
VAR_028997
P
425
S
SUH_HUMAN
Polymorphism
1064387
C
P
411
S
9
UniProt
VAR_071962
D
1989
N
NOTC1_HUMAN
Disease (AOS5)
---
K
D
1990
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ANK_REPEAT (K:1928-1960|K:1995-2027|K:2028-206...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REPEAT
PS50088
Ankyrin repeat profile.
NOTC1_HUMAN
1927-1959
1994-2026
2027-2059
2060-2092
4
K:1928-1960
K:1995-2027
K:2028-2060
K:2061-2093
[
close PROSITE info
]
Exons
(15, 15)
Info
All Exons
Exon 1.31 (K:1884-1979 (gaps))
Exon 1.32 (K:1980-2029)
Exon 1.33 (K:2029-2061)
Exon 1.34 (K:2062-2120)
Exon 2.1a (M:16-70)
Exon 3.14 (C:11-19)
Exon 3.15d (C:19-51)
Exon 3.18d (C:51-106)
Exon 3.19d (C:107-165)
Exon 3.20c (C:165-211)
Exon 3.21a (C:211-248)
Exon 3.22b (C:249-295)
Exon 3.23a (C:296-347)
Exon 3.23e (C:348-382)
Exon 3.24b (C:382-434)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.30/1.31
02: Boundary 1.31/1.32
03: Boundary 1.32/1.33
04: Boundary 1.33/1.34
05: Boundary 1.34/-
06: Boundary -/2.1a
07: Boundary 2.1a/2.2
08: Boundary 3.4a/3.14
09: Boundary 3.14/3.15d
10: Boundary 3.15d/3.18d
11: Boundary 3.18d/3.19d
12: Boundary 3.19d/3.20c
13: Boundary 3.20c/3.21a
14: Boundary 3.21a/3.22b
15: Boundary 3.22b/3.23a
16: Boundary 3.23a/3.23e
17: Boundary 3.23e/3.24b
18: Boundary 3.24b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000277541
1
ENSE00001247593
chr9:
139440314-139440178
137
NOTC1_HUMAN
1-21
21
0
-
-
1.2
ENST00000277541
2
ENSE00001124718
chr9:
139438554-139438476
79
NOTC1_HUMAN
21-47
27
0
-
-
1.3a
ENST00000277541
3a
ENSE00001042401
chr9:
139418431-139418169
263
NOTC1_HUMAN
47-135
89
0
-
-
1.4a
ENST00000277541
4a
ENSE00000985020
chr9:
139417640-139417302
339
NOTC1_HUMAN
135-248
114
0
-
-
1.5
ENST00000277541
5
ENSE00001378880
chr9:
139414017-139413895
123
NOTC1_HUMAN
248-289
42
0
-
-
1.6
ENST00000277541
6
ENSE00000985022
chr9:
139413276-139413043
234
NOTC1_HUMAN
289-367
79
0
-
-
1.7
ENST00000277541
7
ENSE00000985023
chr9:
139412744-139412589
156
NOTC1_HUMAN
367-419
53
0
-
-
1.8
ENST00000277541
8
ENSE00000985024
chr9:
139412389-139412204
186
NOTC1_HUMAN
419-481
63
0
-
-
1.9
ENST00000277541
9
ENSE00000985025
chr9:
139411837-139411724
114
NOTC1_HUMAN
481-519
39
0
-
-
1.10
ENST00000277541
10
ENSE00000985026
chr9:
139410546-139410433
114
NOTC1_HUMAN
519-557
39
0
-
-
1.11
ENST00000277541
11
ENSE00000985027
chr9:
139410168-139409935
234
NOTC1_HUMAN
557-635
79
0
-
-
1.12
ENST00000277541
12
ENSE00000985028
chr9:
139409852-139409742
111
NOTC1_HUMAN
635-672
38
0
-
-
1.13
ENST00000277541
13
ENSE00000985029
chr9:
139409154-139408962
193
NOTC1_HUMAN
672-736
65
0
-
-
1.14
ENST00000277541
14
ENSE00000985030
chr9:
139407989-139407844
146
NOTC1_HUMAN
736-785
50
0
-
-
1.15
ENST00000277541
15
ENSE00000985031
chr9:
139407586-139407473
114
NOTC1_HUMAN
785-823
39
0
-
-
1.16
ENST00000277541
16
ENSE00000985032
chr9:
139405723-139405604
120
NOTC1_HUMAN
823-863
41
0
-
-
1.17
ENST00000277541
17
ENSE00000985033
chr9:
139405257-139405105
153
NOTC1_HUMAN
863-914
52
0
-
-
1.18
ENST00000277541
18
ENSE00000985034
chr9:
139404413-139404185
229
NOTC1_HUMAN
914-990
77
0
-
-
1.19
ENST00000277541
19
ENSE00000985035
chr9:
139403523-139403322
202
NOTC1_HUMAN
990-1057
68
0
-
-
1.20
ENST00000277541
20
ENSE00000985036
chr9:
139402837-139402684
154
NOTC1_HUMAN
1058-1109
52
0
-
-
1.21
ENST00000277541
21
ENSE00000985037
chr9:
139402591-139402407
185
NOTC1_HUMAN
1109-1170
62
0
-
-
1.22
ENST00000277541
22
ENSE00000985038
chr9:
139401889-139401757
133
NOTC1_HUMAN
1171-1215
45
0
-
-
1.23
ENST00000277541
23
ENSE00000985039
chr9:
139401425-139401168
258
NOTC1_HUMAN
1215-1301
87
0
-
-
1.24
ENST00000277541
24
ENSE00000985040
chr9:
139401091-139400979
113
NOTC1_HUMAN
1301-1338
38
0
-
-
1.25
ENST00000277541
25
ENSE00000985041
chr9:
139400333-139399762
572
NOTC1_HUMAN
1339-1529
191
0
-
-
1.26a
ENST00000277541
26a
ENSE00000985042
chr9:
139399556-139399125
432
NOTC1_HUMAN
1529-1673
145
0
-
-
1.27
ENST00000277541
27
ENSE00001124572
chr9:
139397782-139397634
149
NOTC1_HUMAN
1673-1723
51
0
-
-
1.28b
ENST00000277541
28b
ENSE00000985044
chr9:
139396940-139396724
217
NOTC1_HUMAN
1723-1795
73
0
-
-
1.29
ENST00000277541
29
ENSE00000985045
chr9:
139396540-139396453
88
NOTC1_HUMAN
1795-1824
30
0
-
-
1.30
ENST00000277541
30
ENSE00000985046
chr9:
139396365-139396200
166
NOTC1_HUMAN
1825-1880
56
0
-
-
1.31
ENST00000277541
31
ENSE00000985047
chr9:
139395299-139395004
296
NOTC1_HUMAN
1880-1978
99
1
K:1884-1979 (gaps)
96
1.32
ENST00000277541
32
ENSE00000985048
chr9:
139393711-139393564
148
NOTC1_HUMAN
1979-2028
50
1
K:1980-2029
50
1.33
ENST00000277541
33
ENSE00000985049
chr9:
139393448-139393351
98
NOTC1_HUMAN
2028-2060
33
1
K:2029-2061
33
1.34
ENST00000277541
34
ENSE00001247584
chr9:
139392010-139388896
3115
NOTC1_HUMAN
2061-2555
495
1
K:2062-2120
59
2.1a
ENST00000292599
1a
ENSE00001258912
chr5:
179159851-179160428
578
MAML1_HUMAN
1-105
105
1
M:16-70
55
2.2
ENST00000292599
2
ENSE00001056012
chr5:
179192327-179193742
1416
MAML1_HUMAN
106-577
472
0
-
-
2.3a
ENST00000292599
3a
ENSE00001056011
chr5:
179195851-179196090
240
MAML1_HUMAN
578-657
80
0
-
-
2.4b
ENST00000292599
4b
ENSE00001056013
chr5:
179198148-179198244
97
MAML1_HUMAN
658-690
33
0
-
-
2.5c
ENST00000292599
5c
ENSE00001151658
chr5:
179200896-179204287
3392
MAML1_HUMAN
690-1016
327
0
-
-
3.4a
ENST00000361572
4a
ENSE00002085861
chr4:
26322185-26322437
253
SUH_HUMAN
1-20
20
0
-
-
3.14
ENST00000361572
14
ENSE00002192386
chr4:
26387975-26388013
39
SUH_HUMAN
20-33
14
1
C:11-19
9
3.15d
ENST00000361572
15d
ENSE00001150906
chr4:
26407797-26407892
96
SUH_HUMAN
33-65
33
1
C:19-51
33
3.18d
ENST00000361572
18d
ENSE00001122481
chr4:
26417097-26417262
166
SUH_HUMAN
65-120
56
1
C:51-106
56
3.19d
ENST00000361572
19d
ENSE00002194209
chr4:
26422173-26422347
175
SUH_HUMAN
121-179
59
1
C:107-165
59
3.20c
ENST00000361572
20c
ENSE00002197042
chr4:
26425964-26426101
138
SUH_HUMAN
179-225
47
1
C:165-211
47
3.21a
ENST00000361572
21a
ENSE00001122462
chr4:
26426253-26426365
113
SUH_HUMAN
225-262
38
1
C:211-248
38
3.22b
ENST00000361572
22b
ENSE00001122458
chr4:
26430342-26430482
141
SUH_HUMAN
263-309
47
1
C:249-295
47
3.23a
ENST00000361572
23a
ENSE00001122452
chr4:
26431520-26431675
156
SUH_HUMAN
310-361
52
1
C:296-347
52
3.23e
ENST00000361572
23e
ENSE00001122445
chr4:
26432041-26432144
104
SUH_HUMAN
362-396
35
1
C:348-382
35
3.24b
ENST00000361572
24b
ENSE00002027261
chr4:
26432314-26432629
316
SUH_HUMAN
396-500
105
1
C:382-434
53
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2f8xK00 (K:1884-2120)
2a: CATH_2f8xC03 (C:341-434)
3a: CATH_2f8xC01 (C:11-160,C:319-340)
4a: CATH_2f8xC02 (C:161-318)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
[unclassified]
(7)
1a
2f8xK00
K:1884-2120
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
2f8xC03
C:341-434
Homologous Superfamily
:
Lin-12 and glp-1 transcriptional regulator; domain 1
(7)
[unclassified]
(4)
3a
2f8xC01
C:11-160,C:319-340
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
[unclassified]
(4)
4a
2f8xC02
C:161-318
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (132 KB)
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