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2F7K
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PYRIDOXAL KINASE
Authors
:
T. Jiang, P. Cao, Y. Gong, L. Tang
Date
:
01 Dec 05 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta Structure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Cao, Y. Gong, L. Tang, Y. C. Leung, T. Jiang
Crystal Structure Of Human Pyridoxal Kinase
J. Struct. Biol. V. 154 327 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(11, 22)
Info
All Exons
Exon 1.1c (A:1-29 | B:1-29)
Exon 1.6 (A:30-48 | B:30-48)
Exon 1.9e (A:48-83 | B:48-83)
Exon 1.10b (A:83-111 | B:83-111)
Exon 1.12b (A:111-126 | B:111-126)
Exon 1.14 (A:127-155 | B:127-155)
Exon 1.15 (A:155-170 | B:155-170)
Exon 1.16 (A:171-208 | B:171-208)
Exon 1.17c (A:208-253 | B:208-253)
Exon 1.18b (A:254-276 | B:254-276)
Exon 1.19e (A:276-312 | B:276-312)
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All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.6
03: Boundary 1.6/1.9e
04: Boundary 1.9e/1.10b
05: Boundary 1.10b/1.12b
06: Boundary 1.12b/1.14
07: Boundary 1.14/1.15
08: Boundary 1.15/1.16
09: Boundary 1.16/1.17c
10: Boundary 1.17c/1.18b
11: Boundary 1.18b/1.19e
12: Boundary 1.19e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000291565
1c
ENSE00001861574
chr21:
45138993-45139262
270
PDXK_HUMAN
1-29
29
2
A:1-29
B:1-29
29
29
1.6
ENST00000291565
6
ENSE00001050589
chr21:
45153950-45154004
55
PDXK_HUMAN
30-48
19
2
A:30-48
B:30-48
19
19
1.9e
ENST00000291565
9e
ENSE00001050594
chr21:
45161548-45161652
105
PDXK_HUMAN
48-83
36
2
A:48-83
B:48-83
36
36
1.10b
ENST00000291565
10b
ENSE00001050590
chr21:
45163605-45163688
84
PDXK_HUMAN
83-111
29
2
A:83-111
B:83-111
29
29
1.12b
ENST00000291565
12b
ENSE00001050584
chr21:
45165960-45166006
47
PDXK_HUMAN
111-126
16
2
A:111-126
B:111-126
16
16
1.14
ENST00000291565
14
ENSE00001050578
chr21:
45168876-45168961
86
PDXK_HUMAN
127-155
29
2
A:127-155
B:127-155
29
29
1.15
ENST00000291565
15
ENSE00001050582
chr21:
45170381-45170426
46
PDXK_HUMAN
155-170
16
2
A:155-170
B:155-170
16
16
1.16
ENST00000291565
16
ENSE00001050593
chr21:
45172399-45172510
112
PDXK_HUMAN
171-208
38
2
A:171-208
B:171-208
38
38
1.17c
ENST00000291565
17c
ENSE00001050587
chr21:
45173464-45173600
137
PDXK_HUMAN
208-253
46
2
A:208-253
B:208-253
46
46
1.18b
ENST00000291565
18b
ENSE00001050583
chr21:
45175579-45175645
67
PDXK_HUMAN
254-276
23
2
A:254-276
B:254-276
23
23
1.19e
ENST00000291565
19e
ENSE00001431057
chr21:
45175832-45182188
6357
PDXK_HUMAN
276-312
37
2
A:276-312
B:276-312
37
37
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2f7ka_ (A:)
1b: SCOP_d2f7kb_ (B:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
PfkB-like kinase
(20)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2f7ka_
A:
1b
d2f7kb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2f7kA00 (A:-10-312)
1b: CATH_2f7kB00 (B:-10-312)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.20, no name defined]
(73)
Human (Homo sapiens)
(10)
1a
2f7kA00
A:-10-312
1b
2f7kB00
B:-10-312
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Pfam Domains
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Asymmetric Unit 1
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