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2F7F
Biol. Unit 1
Info
Asym.Unit (95 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS PUTATIVE NICOTINATE PHOSPHORIBOSYLTRANSFERASE, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
Authors
:
Y. Patskovsky, S. C. Almo, S. K. Burley, New York Sgx Research Cente Structural Genomics (Nysgxrc)
Date
:
30 Nov 05 (Deposition) - 13 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Y. Patskovsky, S. C. Almo
Crystal Structure Of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase
To Be Published
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: DIPHOSPHATE (DPOa)
2a: GLYCEROL (GOLa)
3a: NICOTINIC ACID (NIOa)
3b: NICOTINIC ACID (NIOb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DPO
2
Ligand/Ion
DIPHOSPHATE
2
GOL
2
Ligand/Ion
GLYCEROL
3
NIO
4
Ligand/Ion
NICOTINIC ACID
4
SO4
16
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:69 , GLU A:70 , HOH A:856
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
ASN A:293 , ASP A:294 , GLY A:316 , THR A:317 , HOH A:835 , HOH A:1034
BINDING SITE FOR RESIDUE SO4 A 502
03
AC3
SOFTWARE
HIS A:225 , ARG A:226 , ASP A:227 , HOH A:847 , HOH A:1059
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
ARG A:226 , ASN A:257
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
ARG A:276 , THR A:285 , GLU A:286 , ALA A:287 , LYS A:288 , ASP A:311 , SER A:372 , HOH A:914 , HOH A:1175
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ILE A:194 , PHE A:195 , SO4 A:510 , HOH A:1121
BINDING SITE FOR RESIDUE SO4 A 507
07
AC7
SOFTWARE
ALA A:6 , ASP A:7 , SO4 A:507
BINDING SITE FOR RESIDUE SO4 A 510
08
AC8
SOFTWARE
ARG A:426 , GLU A:429 , LEU A:430
BINDING SITE FOR RESIDUE SO4 A 511
09
AC9
SOFTWARE
ASP A:15 , TYR A:17 , PHE A:160 , ARG A:163 , GLY A:201 , THR A:202 , ARG A:262 , HOH A:809
BINDING SITE FOR RESIDUE NIO A 601
10
BC1
SOFTWARE
MET A:396 , HIS A:398 , ILE A:404 , LYS A:406 , PRO A:461 , ASP A:463 , HOH A:865 , HOH A:1168
BINDING SITE FOR RESIDUE NIO A 602
11
BC2
SOFTWARE
TYR A:17 , ARG A:163 , ALA A:204 , HIS A:205 , SER A:206 , ARG A:262 , ASP A:264 , PHE A:332 , LYS A:333 , HOH A:818 , HOH A:875
BINDING SITE FOR RESIDUE DPO A 701
12
BC3
SOFTWARE
GLU A:38 , TYR A:40 , GLU A:112 , PRO A:113 , THR A:359 , LYS A:363 , HOH A:976
BINDING SITE FOR RESIDUE GOL A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2f7fa2 (A:4-140)
2a: SCOP_d2f7fa1 (A:141-485)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
Nicotinate/Quinolinate PRTase N-terminal domain-like
(25)
Family
:
NadC N-terminal domain-like
(13)
Protein domain
:
Putative nicotinate phosphoribosyltransferase EF2626
(2)
Enterococcus faecalis [TaxId: 1351]
(2)
1a
d2f7fa2
A:4-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Nicotinate/Quinolinate PRTase C-terminal domain-like
(25)
Family
:
NadC C-terminal domain-like
(13)
Protein domain
:
Putative nicotinate phosphoribosyltransferase EF2626
(2)
Enterococcus faecalis [TaxId: 1351]
(2)
2a
d2f7fa1
A:141-485
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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