PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2F5J
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (114 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MRG DOMAIN FROM HUMAN MRG15
Authors
:
P. Zhang, J. Du, J. Ding
Date
:
26 Nov 05 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mrg Fold, Mainly A-Helix, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Zhang, J. Zhao, B. Wang, J. Du, Y. Lu, J. Chen, J. Ding
The Mrg Domain Of Human Mrg15 Uses A Shallow Hydrophobic Pocket To Interact With The N-Terminal Region Of Pam14
Protein Sci. V. 15 2423 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.10 (A:156-180 | B:156-180)
Exon 1.11 (A:181-203 | B:181-204)
Exon 1.12 (A:212-268 | B:212-268)
Exon 1.13 (A:268-296 | B:268-296)
Exon 1.14b (A:296-320 | B:296-321)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14b
6: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000331268
2b
ENSE00001829419
chr15:
79165211-79165399
189
MO4L1_HUMAN
1-14
14
0
-
-
1.3
ENST00000331268
3
ENSE00001335587
chr15:
79170555-79170601
47
MO4L1_HUMAN
14-29
16
0
-
-
1.4
ENST00000331268
4
ENSE00001335586
chr15:
79172854-79172921
68
MO4L1_HUMAN
30-52
23
0
-
-
1.5
ENST00000331268
5
ENSE00001335584
chr15:
79177309-79177425
117
MO4L1_HUMAN
52-91
40
0
-
-
1.6
ENST00000331268
6
ENSE00001335511
chr15:
79178483-79178569
87
MO4L1_HUMAN
91-120
30
0
-
-
1.7
ENST00000331268
7
ENSE00001335510
chr15:
79179611-79179691
81
MO4L1_HUMAN
120-147
28
0
-
-
1.8
ENST00000331268
8
ENSE00001335509
chr15:
79183331-79183356
26
MO4L1_HUMAN
147-156
10
0
-
-
1.9
ENST00000331268
9
ENSE00001335507
chr15:
79183826-79183914
89
MO4L1_HUMAN
156-185
30
0
-
-
1.10
ENST00000331268
10
ENSE00001335505
chr15:
79184554-79184655
102
MO4L1_HUMAN
186-219
34
2
A:156-180
B:156-180
25
25
1.11
ENST00000331268
11
ENSE00001335503
chr15:
79185881-79185969
89
MO4L1_HUMAN
220-249
30
2
A:181-203
B:181-204
23
24
1.12
ENST00000331268
12
ENSE00001335501
chr15:
79186400-79186572
173
MO4L1_HUMAN
249-307
59
2
A:212-268
B:212-268
57
57
1.13
ENST00000331268
13
ENSE00001335499
chr15:
79187162-79187246
85
MO4L1_HUMAN
307-335
29
2
A:268-296
B:268-296
29
29
1.14b
ENST00000331268
14b
ENSE00001899262
chr15:
79189325-79190475
1151
MO4L1_HUMAN
335-362
28
2
A:296-320
B:296-321
25
26
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (114 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2F5J
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help