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2F59
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (233 KB)
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(1)
Title
:
LUMAZINE SYNTHASE RIBH1 FROM BRUCELLA ABORTUS (GENE BRUAB1_0785, SWISS-PROT ENTRY Q57DY1) COMPLEXED WITH INHIBITOR 5-NITRO-6-(D-RIBITYLAMINO)-2,4(1H,3H) PYRIMIDINEDIONE
Authors
:
S. Klinke, V. Zylberman, H. R. Bonomi, I. Haase, B. G. Guimaraes, B. C. Br A. Bacher, M. Fischer, F. A. Goldbaum
Date
:
25 Nov 05 (Deposition) - 28 Nov 06 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: A,B,C,D,E (2x)
Keywords
:
Enzyme-Substrate Analogue, Inhibitor Complex, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Klinke, V. Zylberman, H. R. Bonomi, I. Haase, B. G. Guimaraes, B. C. Braden, A. Bacher, M. Fischer, F. A. Goldbaum
Structural And Kinetic Properties Of Lumazine Synthase Isoenzymes In The Order Rhizobiales
J. Mol. Biol. V. 373 664 2007
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIa)
2b: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIb)
2c: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIc)
2d: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INId)
2e: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
INI
5
Mod. Residue
5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:67 , GLU A:73 , ALA E:67 , GLU E:73
BINDING SITE FOR RESIDUE CA A 301
02
AC2
SOFTWARE
GLU A:124
BINDING SITE FOR RESIDUE CA A 304
03
AC3
SOFTWARE
ALA B:67 , GLU B:73 , ALA D:67 , GLU D:73
BINDING SITE FOR RESIDUE CA B 302
04
AC4
SOFTWARE
ALA C:67 , GLU C:73
BINDING SITE FOR RESIDUE CA C 303
05
AC5
SOFTWARE
GLU C:124
BINDING SITE FOR RESIDUE CA C 305
06
AC6
SOFTWARE
ASP D:24 , ASP D:25 , ASP D:28
BINDING SITE FOR RESIDUE CA D 306
07
AC7
SOFTWARE
PHE A:22 , PRO A:51 , GLY A:52 , ALA A:53 , LEU A:54 , GLU A:55 , THR A:82 , VAL A:83 , HIS A:90 , PHE A:91 , VAL A:94 , HOH A:306 , ASN E:115 , LYS E:137 , PHE E:140
BINDING SITE FOR RESIDUE INI A 201
08
AC8
SOFTWARE
ASN A:115 , LYS A:137 , PHE A:140 , HOH A:348 , PHE B:22 , PRO B:51 , GLY B:52 , ALA B:53 , LEU B:54 , GLU B:55 , THR B:82 , VAL B:83 , HIS B:90 , PHE B:91 , VAL B:94 , HOH B:303
BINDING SITE FOR RESIDUE INI B 202
09
AC9
SOFTWARE
ASN B:115 , LYS B:137 , PHE B:140 , ALA B:144 , HOH B:331 , PHE C:22 , PRO C:51 , GLY C:52 , ALA C:53 , LEU C:54 , GLU C:55 , THR C:82 , VAL C:83 , HIS C:90 , PHE C:91 , VAL C:94 , HOH C:309
BINDING SITE FOR RESIDUE INI C 203
10
BC1
SOFTWARE
ASN C:115 , PHE C:140 , PHE D:22 , PRO D:51 , GLY D:52 , ALA D:53 , LEU D:54 , GLU D:55 , THR D:82 , VAL D:83 , HIS D:90 , PHE D:91 , VAL D:94 , HOH D:310
BINDING SITE FOR RESIDUE INI D 204
11
BC2
SOFTWARE
ASN D:115 , LYS D:137 , PHE D:140 , ALA E:20 , PHE E:22 , TYR E:23 , PRO E:51 , GLY E:52 , ALA E:53 , LEU E:54 , GLU E:55 , THR E:82 , VAL E:83 , HIS E:90 , PHE E:91 , VAL E:94 , HOH E:209
BINDING SITE FOR RESIDUE INI E 205
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2f59D00 (D:11-157)
1b: CATH_2f59A00 (A:12-157)
1c: CATH_2f59B00 (B:12-157)
1d: CATH_2f59C00 (C:12-157)
1e: CATH_2f59E00 (E:12-157)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Brucella abortus. Organism_taxid: 235.
(4)
1a
2f59D00
D:11-157
1b
2f59A00
A:12-157
1c
2f59B00
B:12-157
1d
2f59C00
C:12-157
1e
2f59E00
E:12-157
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (233 KB)
Header - Biol.Unit 2
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