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2F50
Theor. Model
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Theoretical Model (53 KB)
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(1)
Title
:
THEORETICAL MODEL OF AN EVMBL8 COMPLEXED WITH THE CEFOTAXIME
Authors
:
J. K. Lee, T. Moon, H. -S. Park, H. -S. Kim, C. N. Yoon
Date
:
25 Nov 05 (Deposition) - 28 Feb 06 (Release) - 02 May 06 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Metallo Beta-Lactamase, Evmbl8-Cefotaxime Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. -S. Park, S. -H. Nam, J. K. Lee, C. N. Yoon, B. Mannervik, S. J. Benkovic, H. -S. Kim
Design And Evolution Of New Catalytic Activity With An Existing Protein Scaffold.
Science V. 311 535 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: (6S,7S)-3-[(ACETYLOXY)METHYL]-7-{[... (CE3a)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
CE3
1
Ligand/Ion
(6S,7S)-3-[(ACETYLOXY)METHYL]-7-{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO)ETHANOYL]AMINO}-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCT-2-ENE-2-CARBOXYLIC ACID
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:2-16)
Exon 1.3 (A:16-47 (gaps))
Exon 1.4 (A:48-69)
Exon 1.5 (A:69-116)
Exon 1.6 (A:117-154)
Exon 1.7 (A:154-188)
Exon 1.8 (A:189-196)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000397356
1a
ENSE00001908102
chr16:
1877162-1876713
450
GLO2_HUMAN
1-26
26
1
A:2-16
15
1.3
ENST00000397356
3
ENSE00001791655
chr16:
1873038-1872866
173
GLO2_HUMAN
26-83
58
1
A:16-47 (gaps)
62
1.4
ENST00000397356
4
ENSE00000945924
chr16:
1872365-1872301
65
GLO2_HUMAN
84-105
22
1
A:48-69
22
1.5
ENST00000397356
5
ENSE00000683285
chr16:
1870015-1869898
118
GLO2_HUMAN
105-144
40
1
A:69-116
48
1.6
ENST00000397356
6
ENSE00000683283
chr16:
1869224-1869116
109
GLO2_HUMAN
145-181
37
1
A:117-154
38
1.7
ENST00000397356
7
ENSE00001670106
chr16:
1867272-1867169
104
GLO2_HUMAN
181-215
35
1
A:154-188
35
1.8
ENST00000397356
8
ENSE00001739735
chr16:
1866995-1866894
102
GLO2_HUMAN
216-249
34
1
A:189-196
8
1.9
ENST00000397356
9
ENSE00001710138
chr16:
1859834-1859755
80
GLO2_HUMAN
250-276
27
0
-
-
1.10b
ENST00000397356
10b
ENSE00001849129
chr16:
1859383-1859104
280
GLO2_HUMAN
276-308
33
0
-
-
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SCOP Domains
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