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2F2S
Biol. Unit 1
Info
Asym.Unit (250 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (243 KB)
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(1)
Title
:
HUMAN MITOCHONDRIAL ACETOACETYL-COA THIOLASE
Authors
:
J. R. Min, L. Dombrovski, T. Antoshenko, H. Wu, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
17 Nov 05 (Deposition) - 29 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Acat1; Acetyl-Coenzyme A Acetyltransferase 1; T2; Mat; Thil, Structural Genomics, Sgc, Structural Genomics Consortium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dombrovski, J. R. Min, T. Antoshenko, H. Wu, P. Loppnau, A. M. Edwards, C. H. Arrowsmith, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Mitochondrial Acetoacetyl-Coa Thiolase Acat1.
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
2c: COENZYME A (COAc)
2d: COENZYME A (COAd)
3a: S-ACETYL-CYSTEINE (SCYa)
3b: S-ACETYL-CYSTEINE (SCYb)
3c: S-ACETYL-CYSTEINE (SCYc)
3d: S-ACETYL-CYSTEINE (SCYd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
COA
4
Ligand/Ion
COENZYME A
3
SCY
4
Mod. Amino Acid
S-ACETYL-CYSTEINE
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:414 , GLY B:418 , HOH B:2010 , HOH B:2067 , CYS C:119
BINDING SITE FOR RESIDUE CL B 2001
2
AC2
SOFTWARE
CYS B:119 , LYS C:124 , ASN C:414 , HOH C:1019 , HOH C:1100
BINDING SITE FOR RESIDUE CL B 2002
3
AC3
SOFTWARE
ASN A:414 , HOH A:2025 , HOH A:2033 , CYS D:119
BINDING SITE FOR RESIDUE CL A 2003
4
AC4
SOFTWARE
SCY A:126 , LEU A:184 , HIS A:192 , MET A:193 , TYR A:219 , ARG A:258 , VAL A:259 , ASP A:260 , LYS A:263 , LEU A:267 , PHE A:271 , ALA A:280 , SER A:284 , ALA A:355 , PHE A:356 , HIS A:385 , ILE A:387 , HOH A:2072
BINDING SITE FOR RESIDUE COA A 1001
5
AC5
SOFTWARE
SCY B:126 , LEU B:184 , HIS B:192 , MET B:193 , TYR B:219 , ARG B:258 , ASP B:260 , LYS B:263 , LEU B:267 , ALA B:281 , SER B:284 , PHE B:356 , HOH B:2053 , HOH B:2092 , HOH B:2111
BINDING SITE FOR RESIDUE COA B 1002
6
AC6
SOFTWARE
SCY C:126 , LEU C:184 , HIS C:192 , MET C:193 , TYR C:219 , ARG C:258 , VAL C:259 , ASP C:260 , LYS C:263 , VAL C:264 , LEU C:267 , LYS C:268 , ALA C:280 , ALA C:281 , SER C:284 , ALA C:355 , PHE C:356 , HOH C:1047 , HOH C:1067 , HOH C:1140
BINDING SITE FOR RESIDUE COA C 1003
7
AC7
SOFTWARE
HOH C:1069 , SCY D:126 , LEU D:184 , HIS D:192 , TYR D:219 , ARG D:258 , VAL D:259 , ASP D:260 , LYS D:263 , LEU D:267 , VAL D:270 , ALA D:280 , ALA D:281 , SER D:284 , ALA D:355 , PHE D:356 , HOH D:1041 , HOH D:1069
BINDING SITE FOR RESIDUE COA D 1004
[
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]
SAPs(SNPs)/Variants
(10, 40)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_007498 (N93S, chain A/B/C/D, )
02: VAR_007499 (G152A, chain A/B/C/D, )
03: VAR_007500 (N158D, chain A/B/C/D, )
04: VAR_007501 (G183R, chain A/B/C/D, )
05: VAR_007502 (T297M, chain A/B/C/D, )
06: VAR_007503 (A301P, chain A/B/C/D, )
07: VAR_007504 (I312T, chain A/B/C/D, )
08: VAR_007505 (A333P, chain A/B/C/D, )
09: VAR_007506 (G379V, chain A/B/C/D, )
10: VAR_007507 (A380T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007498
N
93
S
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
N
93
S
02
UniProt
VAR_007499
G
152
A
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
152
A
03
UniProt
VAR_007500
N
158
D
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
N
158
D
04
UniProt
VAR_007501
G
183
R
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
183
R
05
UniProt
VAR_007502
T
297
M
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
T
297
M
06
UniProt
VAR_007503
A
301
P
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
301
P
07
UniProt
VAR_007504
I
312
T
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
I
312
T
08
UniProt
VAR_007505
A
333
P
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
333
P
09
UniProt
VAR_007506
G
379
V
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
379
V
10
UniProt
VAR_007507
A
380
T
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
380
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:122-140,B:122-140,C:122-140,D:12...)
2: THIOLASE_2 (A:375-391,B:375-391,C:375-391,D:37...)
3: THIOLASE_3 (A:408-421,B:408-421,C:408-421,D:40...)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_HUMAN
122-140
4
A:122-140
B:122-140
C:122-140
D:122-140
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_HUMAN
375-391
4
A:375-391
B:375-391
C:375-391
D:375-391
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_HUMAN
408-421
4
A:408-421
B:408-421
C:408-421
D:408-421
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2f2sB01 (B:41-161,B:230-312)
1b: CATH_2f2sC01 (C:41-161,C:230-312)
1c: CATH_2f2sA01 (A:41-161,A:230-312)
1d: CATH_2f2sA02 (A:188-229,A:313-424)
1e: CATH_2f2sB02 (B:188-229,B:313-424)
1f: CATH_2f2sC02 (C:188-229,C:313-424)
1g: CATH_2f2sD02 (D:188-229,D:313-424)
1h: CATH_2f2sD01 (D:40-161,D:230-312)
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Human (Homo sapiens)
(12)
1a
2f2sB01
B:41-161,B:230-312
1b
2f2sC01
C:41-161,C:230-312
1c
2f2sA01
A:41-161,A:230-312
1d
2f2sA02
A:188-229,A:313-424
1e
2f2sB02
B:188-229,B:313-424
1f
2f2sC02
C:188-229,C:313-424
1g
2f2sD02
D:188-229,D:313-424
1h
2f2sD01
D:40-161,D:230-312
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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