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2F2S
Asym. Unit
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Asym.Unit (250 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (243 KB)
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(1)
Title
:
HUMAN MITOCHONDRIAL ACETOACETYL-COA THIOLASE
Authors
:
J. R. Min, L. Dombrovski, T. Antoshenko, H. Wu, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
17 Nov 05 (Deposition) - 29 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Acat1; Acetyl-Coenzyme A Acetyltransferase 1; T2; Mat; Thil, Structural Genomics, Sgc, Structural Genomics Consortium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dombrovski, J. R. Min, T. Antoshenko, H. Wu, P. Loppnau, A. M. Edwards, C. H. Arrowsmith, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Mitochondrial Acetoacetyl-Coa Thiolase Acat1.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
2c: COENZYME A (COAc)
2d: COENZYME A (COAd)
3a: S-ACETYL-CYSTEINE (SCYa)
3b: S-ACETYL-CYSTEINE (SCYb)
3c: S-ACETYL-CYSTEINE (SCYc)
3d: S-ACETYL-CYSTEINE (SCYd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
COA
4
Ligand/Ion
COENZYME A
3
SCY
4
Mod. Amino Acid
S-ACETYL-CYSTEINE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:414 , GLY B:418 , HOH B:2010 , HOH B:2067 , CYS C:119
BINDING SITE FOR RESIDUE CL B 2001
2
AC2
SOFTWARE
CYS B:119 , LYS C:124 , ASN C:414 , HOH C:1019 , HOH C:1100
BINDING SITE FOR RESIDUE CL B 2002
3
AC3
SOFTWARE
ASN A:414 , HOH A:2025 , HOH A:2033 , CYS D:119
BINDING SITE FOR RESIDUE CL A 2003
4
AC4
SOFTWARE
SCY A:126 , LEU A:184 , HIS A:192 , MET A:193 , TYR A:219 , ARG A:258 , VAL A:259 , ASP A:260 , LYS A:263 , LEU A:267 , PHE A:271 , ALA A:280 , SER A:284 , ALA A:355 , PHE A:356 , HIS A:385 , ILE A:387 , HOH A:2072
BINDING SITE FOR RESIDUE COA A 1001
5
AC5
SOFTWARE
SCY B:126 , LEU B:184 , HIS B:192 , MET B:193 , TYR B:219 , ARG B:258 , ASP B:260 , LYS B:263 , LEU B:267 , ALA B:281 , SER B:284 , PHE B:356 , HOH B:2053 , HOH B:2092 , HOH B:2111
BINDING SITE FOR RESIDUE COA B 1002
6
AC6
SOFTWARE
SCY C:126 , LEU C:184 , HIS C:192 , MET C:193 , TYR C:219 , ARG C:258 , VAL C:259 , ASP C:260 , LYS C:263 , VAL C:264 , LEU C:267 , LYS C:268 , ALA C:280 , ALA C:281 , SER C:284 , ALA C:355 , PHE C:356 , HOH C:1047 , HOH C:1067 , HOH C:1140
BINDING SITE FOR RESIDUE COA C 1003
7
AC7
SOFTWARE
HOH C:1069 , SCY D:126 , LEU D:184 , HIS D:192 , TYR D:219 , ARG D:258 , VAL D:259 , ASP D:260 , LYS D:263 , LEU D:267 , VAL D:270 , ALA D:280 , ALA D:281 , SER D:284 , ALA D:355 , PHE D:356 , HOH D:1041 , HOH D:1069
BINDING SITE FOR RESIDUE COA D 1004
[
close Site info
]
SAPs(SNPs)/Variants
(10, 40)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_007498 (N93S, chain A/B/C/D, )
02: VAR_007499 (G152A, chain A/B/C/D, )
03: VAR_007500 (N158D, chain A/B/C/D, )
04: VAR_007501 (G183R, chain A/B/C/D, )
05: VAR_007502 (T297M, chain A/B/C/D, )
06: VAR_007503 (A301P, chain A/B/C/D, )
07: VAR_007504 (I312T, chain A/B/C/D, )
08: VAR_007505 (A333P, chain A/B/C/D, )
09: VAR_007506 (G379V, chain A/B/C/D, )
10: VAR_007507 (A380T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007498
N
93
S
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
N
93
S
02
UniProt
VAR_007499
G
152
A
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
152
A
03
UniProt
VAR_007500
N
158
D
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
N
158
D
04
UniProt
VAR_007501
G
183
R
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
183
R
05
UniProt
VAR_007502
T
297
M
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
T
297
M
06
UniProt
VAR_007503
A
301
P
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
301
P
07
UniProt
VAR_007504
I
312
T
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
I
312
T
08
UniProt
VAR_007505
A
333
P
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
333
P
09
UniProt
VAR_007506
G
379
V
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
G
379
V
10
UniProt
VAR_007507
A
380
T
THIL_HUMAN
Disease (3KTD)
---
A/B/C/D
A
380
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:122-140,B:122-140,C:122-140,D:12...)
2: THIOLASE_2 (A:375-391,B:375-391,C:375-391,D:37...)
3: THIOLASE_3 (A:408-421,B:408-421,C:408-421,D:40...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_HUMAN
122-140
4
A:122-140
B:122-140
C:122-140
D:122-140
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_HUMAN
375-391
4
A:375-391
B:375-391
C:375-391
D:375-391
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_HUMAN
408-421
4
A:408-421
B:408-421
C:408-421
D:408-421
[
close PROSITE info
]
Exons
(12, 46)
Info
All Exons
Exon 1.1a (A:32-39 | B:33-39 | - | -)
Exon 1.5 (A:40-40 | B:40-40 | C:37-40 | D:40...)
Exon 1.6a (A:41-80 | B:41-80 | C:41-80 | D:41...)
Exon 1.7b (A:80-112 | B:80-112 | C:80-112 | D...)
Exon 1.8b (A:112-145 | B:112-145 | C:112-145 ...)
Exon 1.10b (A:146-193 | B:146-193 | C:146-193 ...)
Exon 1.11c (A:194-242 | B:194-239 | C:194-243 ...)
Exon 1.12 (A:250-276 | B:249-276 | C:246-276 ...)
Exon 1.13a (A:276-314 | B:276-314 | C:276-314 ...)
Exon 1.14a (A:314-335 | B:314-335 | C:314-335 ...)
Exon 1.15b (A:336-388 | B:336-388 | C:336-388 ...)
Exon 1.16b (A:388-427 | B:388-427 | C:388-426 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.5
03: Boundary 1.5/1.6a
04: Boundary 1.6a/1.7b
05: Boundary 1.7b/1.8b
06: Boundary 1.8b/1.10b
07: Boundary 1.10b/1.11c
08: Boundary 1.11c/1.12
09: Boundary 1.12/1.13a
10: Boundary 1.13a/1.14a
11: Boundary 1.14a/1.15b
12: Boundary 1.15b/1.16b
13: Boundary 1.16b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265838
1a
ENSE00001101645
chr11:
107992243-107992405
163
THIL_HUMAN
1-24
24
2
A:32-39
B:33-39
-
-
8
7
-
-
1.5
ENST00000265838
5
ENSE00001373389
chr11:
108002634-108002681
48
THIL_HUMAN
25-40
16
4
A:40-40
B:40-40
C:37-40
D:40-40
1
1
4
1
1.6a
ENST00000265838
6a
ENSE00001101659
chr11:
108004547-108004664
118
THIL_HUMAN
41-80
40
4
A:41-80
B:41-80
C:41-80
D:41-80
40
40
40
40
1.7b
ENST00000265838
7b
ENSE00001101630
chr11:
108004948-108005043
96
THIL_HUMAN
80-112
33
4
A:80-112
B:80-112
C:80-112
D:80-112
33
33
33
33
1.8b
ENST00000265838
8b
ENSE00001101665
chr11:
108005869-108005969
101
THIL_HUMAN
112-145
34
4
A:112-145
B:112-145
C:112-145
D:112-145
34
34
34
34
1.10b
ENST00000265838
10b
ENSE00000746482
chr11:
108009625-108009768
144
THIL_HUMAN
146-193
48
4
A:146-193
B:146-193
C:146-193
D:146-193
48
48
48
48
1.11c
ENST00000265838
11c
ENSE00001005122
chr11:
108010792-108010942
151
THIL_HUMAN
194-244
51
4
A:194-242
B:194-239
C:194-243
D:194-242
49
46
50
49
1.12
ENST00000265838
12
ENSE00001101670
chr11:
108012332-108012427
96
THIL_HUMAN
244-276
33
4
A:250-276
B:249-276
C:246-276
D:248-276
27
28
31
29
1.13a
ENST00000265838
13a
ENSE00001101653
chr11:
108013164-108013277
114
THIL_HUMAN
276-314
39
4
A:276-314
B:276-314
C:276-314
D:276-314
39
39
39
39
1.14a
ENST00000265838
14a
ENSE00001101638
chr11:
108014710-108014774
65
THIL_HUMAN
314-335
22
4
A:314-335
B:314-335
C:314-335
D:314-335
22
22
22
22
1.15b
ENST00000265838
15b
ENSE00001101628
chr11:
108016929-108017086
158
THIL_HUMAN
336-388
53
4
A:336-388
B:336-388
C:336-388
D:336-388
53
53
53
53
1.16b
ENST00000265838
16b
ENSE00001101634
chr11:
108017997-108018503
507
THIL_HUMAN
388-427
40
4
A:388-427
B:388-427
C:388-426
D:388-426
40
40
39
39
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2f2sB01 (B:41-161,B:230-312)
1b: CATH_2f2sC01 (C:41-161,C:230-312)
1c: CATH_2f2sA01 (A:41-161,A:230-312)
1d: CATH_2f2sA02 (A:188-229,A:313-424)
1e: CATH_2f2sB02 (B:188-229,B:313-424)
1f: CATH_2f2sC02 (C:188-229,C:313-424)
1g: CATH_2f2sD02 (D:188-229,D:313-424)
1h: CATH_2f2sD01 (D:40-161,D:230-312)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Human (Homo sapiens)
(12)
1a
2f2sB01
B:41-161,B:230-312
1b
2f2sC01
C:41-161,C:230-312
1c
2f2sA01
A:41-161,A:230-312
1d
2f2sA02
A:188-229,A:313-424
1e
2f2sB02
B:188-229,B:313-424
1f
2f2sC02
C:188-229,C:313-424
1g
2f2sD02
D:188-229,D:313-424
1h
2f2sD01
D:40-161,D:230-312
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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