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2F1O
Biol. Unit 1
Info
Asym.Unit (373 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NQO1 WITH DICOUMAROL
Authors
:
Y. Shaul, G. Asher, O. Dym, P. Tsvetkov, J. Adler, Israel Structural P Center (Ispc)
Date
:
15 Nov 05 (Deposition) - 16 May 06 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Protein Inhibitor, Structural Genomics, Israel Structural Proteomics Center, Ispc, Oxidoreductase, Oxidoreductase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Asher, O. Dym, P. Tsvetkov, J. Adler, Y. Shaul
The Crystal Structure Of Nad(P)H Quinone Oxidoreductase 1 I Complex With Its Potent Inhibitor Dicoumarol.
Biochemistry V. 45 6372 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCa)
1b: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCb)
1c: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCc)
1d: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCd)
1e: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCe)
1f: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCf)
1g: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCg)
1h: BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1... (DTCh)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
2f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
2g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
2h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DTC
2
Ligand/Ion
BISHYDROXY[2H-1-BENZOPYRAN-2-ONE,1,2-BENZOPYRONE]
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:126 , TYR A:128 , PHE A:178 , PHE A:236 , TRP C:105 , GLY C:149 , GLY C:150 , MET C:154 , HIS C:161 , FAD C:2301
BINDING SITE FOR RESIDUE DTC A 2280
2
AC2
SOFTWARE
HIS A:11 , THR A:15 , SER A:16 , PHE A:17 , ASN A:18 , ALA A:20 , PRO A:102 , LEU A:103 , GLN A:104 , TRP A:105 , PHE A:106 , THR A:147 , THR A:148 , GLY A:149 , GLY A:150 , TYR A:155 , ILE A:192 , ARG A:200 , LEU A:204 , GLN C:66 , DTC C:280
BINDING SITE FOR RESIDUE FAD A 301
3
AC5
SOFTWARE
TRP A:105 , PHE A:106 , GLY A:149 , GLY A:150 , MET A:154 , HIS A:161 , FAD A:301 , TYR C:126 , TYR C:128 , PHE C:178 , PHE C:236
BINDING SITE FOR RESIDUE DTC C 280
4
AC6
SOFTWARE
GLN A:66 , PRO A:68 , DTC A:2280 , HIS C:11 , THR C:15 , SER C:16 , PHE C:17 , ASN C:18 , ALA C:20 , PRO C:102 , LEU C:103 , GLN C:104 , TRP C:105 , PHE C:106 , THR C:147 , THR C:148 , GLY C:149 , GLY C:150 , TYR C:155 , ILE C:192 , ARG C:200
BINDING SITE FOR RESIDUE FAD C 2301
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016170 (R138W, chain A/C, )
2: VAR_008384 (P186S, chain A/C, )
3: VAR_050220 (Q268H, chain A/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016170
R
139
W
NQO1_HUMAN
Polymorphism
1131341
A/C
R
138
W
2
UniProt
VAR_008384
P
187
S
NQO1_HUMAN
Polymorphism
1800566
A/C
P
186
S
3
UniProt
VAR_050220
Q
269
H
NQO1_HUMAN
Polymorphism
34447156
A/C
Q
268
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2f1oa_ (A:)
1b: SCOP_d2f1ob_ (B:)
1c: SCOP_d2f1oc_ (C:)
1d: SCOP_d2f1od_ (D:)
1e: SCOP_d2f1oe_ (E:)
1f: SCOP_d2f1of_ (F:)
1g: SCOP_d2f1og_ (G:)
1h: SCOP_d2f1oh_ (H:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
Quinone reductase
(65)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2f1oa_
A:
1b
d2f1ob_
B:
1c
d2f1oc_
C:
1d
d2f1od_
D:
1e
d2f1oe_
E:
1f
d2f1of_
F:
1g
d2f1og_
G:
1h
d2f1oh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2f1oA00 (A:1-273)
1b: CATH_2f1oB00 (B:1-273)
1c: CATH_2f1oC00 (C:1-273)
1d: CATH_2f1oD00 (D:1-273)
1e: CATH_2f1oE00 (E:1-273)
1f: CATH_2f1oF00 (F:1-273)
1g: CATH_2f1oG00 (G:1-273)
1h: CATH_2f1oH00 (H:1-273)
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(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.360, no name defined]
(150)
Human (Homo sapiens)
(27)
1a
2f1oA00
A:1-273
1b
2f1oB00
B:1-273
1c
2f1oC00
C:1-273
1d
2f1oD00
D:1-273
1e
2f1oE00
E:1-273
1f
2f1oF00
F:1-273
1g
2f1oG00
G:1-273
1h
2f1oH00
H:1-273
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (373 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
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Biol.Unit 3 (95 KB)
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