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2F17
Biol. Unit 2
Info
Asym.Unit (92 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (168 KB)
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(1)
Title
:
MOUSE THIAMIN PYROPHOSPHOKINASE IN A TERNARY COMPLEX WITH PYRITHIAMIN PYROPHOSPHATE AND AMP AT 2.5 ANGSTROM
Authors
:
J. Y. Liu, D. E. Timm, T. D. Hurley
Date
:
14 Nov 05 (Deposition) - 29 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Beta Barrel, Alpha/Beta/Alpha Sandwich, Pyrophosphokinase, Amp, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Liu, D. E. Timm, T. D. Hurley
Pyrithiamine As A Substrate For Thiamine Pyrophosphokinase
J. Biol. Chem. V. 281 6601 2006
(for further references see the
PDB file header
)
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (PYIa)
4b: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (PYIb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PYI
4
Ligand/Ion
1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM
5
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:46 , ASP A:71 , ASP A:73 , ASP A:100 , AMP A:301 , PYI A:902
BINDING SITE FOR RESIDUE MG A 901
02
AC2
SOFTWARE
ASP B:46 , ASP B:71 , ASP B:100 , EPE B:2201 , PYI B:2202
BINDING SITE FOR RESIDUE MG B 902
03
AC3
SOFTWARE
GLY A:58 , ARG A:60 , SO4 A:405 , HOH A:905
BINDING SITE FOR RESIDUE SO4 A 401
04
AC4
SOFTWARE
GLY B:58 , GLU B:59 , ARG B:60 , TYR B:82 , HOH B:2264
BINDING SITE FOR RESIDUE SO4 B 402
05
AC5
SOFTWARE
HIS A:98 , THR A:99 , THR A:102 , ASN A:140 , THR A:141 , GLN A:144 , PYI A:902
BINDING SITE FOR RESIDUE SO4 A 403
06
AC6
SOFTWARE
LYS A:85 , LYS A:86 , SO4 A:401 , HOH A:905
BINDING SITE FOR RESIDUE SO4 A 405
07
AC7
SOFTWARE
LEU A:142 , VAL A:151 , PRO A:152 , ILE A:153 , TYR A:163 , HOH A:904
BINDING SITE FOR RESIDUE SO4 A 406
08
AC8
SOFTWARE
LEU B:24 , ASN B:25 , ASP B:46 , GLY B:47 , SER B:74 , THR B:99 , ASP B:100 , PHE B:101 , ALA B:137 , SER B:138 , MG B:902 , PYI B:2202
BINDING SITE FOR RESIDUE EPE B 2201
09
AC9
SOFTWARE
GLN A:96 , ASP A:97 , HIS A:98 , THR A:99 , ASP A:100 , ARG A:131 , GLN A:134 , AMP A:301 , SO4 A:403 , MG A:901 , HOH A:906 , HOH A:925 , TRP B:202 , SER B:216 , THR B:217 , SER B:218
BINDING SITE FOR RESIDUE PYI A 902
10
BC1
SOFTWARE
TRP A:202 , SER A:216 , THR A:217 , SER A:218 , ASN A:219 , ASP B:71 , GLN B:96 , ASP B:97 , HIS B:98 , THR B:99 , ASP B:100 , ARG B:131 , MG B:902 , EPE B:2201
BINDING SITE FOR RESIDUE PYI B 2202
11
BC2
SOFTWARE
LEU A:24 , ASN A:25 , GLN A:26 , ALA A:45 , ASP A:46 , GLY A:47 , SER A:74 , THR A:99 , ASP A:100 , PHE A:101 , GLY A:127 , GLY A:129 , GLY A:130 , ARG A:131 , GLN A:134 , MG A:901 , PYI A:902 , HOH A:942
BINDING SITE FOR RESIDUE AMP A 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2f17a1 (A:159-243)
1b: SCOP_d2f17b2 (B:159-243)
2a: SCOP_d2f17a2 (A:-11-158)
2b: SCOP_d2f17b1 (B:1-158)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Family
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Protein domain
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d2f17a1
A:159-243
1b
d2f17b2
B:159-243
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Superfamily
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Family
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Protein domain
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d2f17a2
A:-11-158
2b
d2f17b1
B:1-158
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2f17A02 (A:12-158)
1b: CATH_2f17B02 (B:12-158)
2a: CATH_2f17A01 (A:0-11,A:159-243)
2b: CATH_2f17B01 (B:1-11,B:159-243)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Thiamin pyrophosphokinase, domain 1
(5)
House mouse (Mus musculus)
(2)
1a
2f17A02
A:12-158
1b
2f17B02
B:12-158
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.320, no name defined]
(3)
House mouse (Mus musculus)
(2)
2a
2f17A01
A:0-11,A:159-243
2b
2f17B01
B:1-11,B:159-243
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Pfam Domains
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (92 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (168 KB)
Header - Biol.Unit 2
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