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2F13
Asym. Unit
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Asym.Unit (65 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN SIALIDASE NEU2 IN COMPLEX WITH 2',3'- DIHYDROXYPROPYL ETHER MIMETIC INHIBITOR
Authors
:
L. M. G. Chavas, R. Kato, M. C. Mann, R. J. Thomson, J. C. Dyason, M. Von Itzstein, P. Fusi, C. Tringali, B. Venerando, G. Tettamanti, E. Monti S. Wakatsuki
Date
:
14 Nov 05 (Deposition) - 21 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sialidase, Neuraminidase, Influenza Virus, Drug Design, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. G. Chavas, R. Kato, M. C. Mann, R. J. Thomson, J. C. Dyason, M. Von Itzstein, P. Fusi, C. Tringali, B. Venerando, G. Tettamanti, E. Monti, S. Wakatsuki
Crystal Structure Of The Human Sialidase Neu2 In Complex With 2', 3'- Dihydroxypropyl Ether Mimetic Inhibitor
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMI... (DYMa)
2a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
DYM
1
Ligand/Ion
6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC ACID
2
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:16 , ALA A:17 , HIS A:18 , TYR A:20 , PRO A:316 , HOH A:1059
BINDING SITE FOR RESIDUE PO4 A 1002
2
AC2
SOFTWARE
ARG A:21 , ILE A:22 , ARG A:41 , MET A:85 , TYR A:179 , TYR A:181 , LEU A:217 , GLU A:218 , ARG A:237 , ARG A:304 , TYR A:334 , HOH A:1060 , HOH A:1130
BINDING SITE FOR RESIDUE DYM A 1001
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024461 (S11R, chain A, )
2: VAR_024462 (R41Q, chain A, )
3: VAR_049204 (A145T, chain A, )
4: VAR_055311 (N168N, chain A, )
5: VAR_055312 (R182Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024461
S
11
R
NEUR2_HUMAN
Polymorphism
2233384
A
S
11
R
2
UniProt
VAR_024462
R
41
Q
NEUR2_HUMAN
Polymorphism
2233385
A
R
41
Q
3
UniProt
VAR_049204
A
145
T
NEUR2_HUMAN
Polymorphism
2233390
A
A
145
T
4
UniProt
VAR_055311
H
168
N
NEUR2_HUMAN
Polymorphism
2233391
A
N
168
N
5
UniProt
VAR_055312
R
182
Q
NEUR2_HUMAN
Polymorphism
2233393
A
R
182
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:3-67 (gaps))
Exon 1.2 (A:68-376 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000233840
1
ENSE00001709784
chr2:
233897382-233897582
201
NEUR2_HUMAN
1-67
67
1
A:3-67 (gaps)
65
1.2
ENST00000233840
2
ENSE00000786879
chr2:
233898826-233899767
942
NEUR2_HUMAN
68-380
313
1
A:68-376 (gaps)
309
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2f13a_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Sialidase 2 (Neu2)
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2f13a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (65 KB)
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