PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2EZ0
Biol. Unit 1
Info
Asym.Unit (279 KB)
Biol.Unit 1 (270 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE S107A/E148Q/Y445A MUTANT OF ECCLC, IN COMPLEX WITH A FAB FRAGMENT
Authors
:
S. Lobet, R. Dutzler
Date
:
10 Nov 05 (Deposition) - 24 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.54
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Clc Family Of Channels And Transporters, H+/Cl- Antiporter, Membrane Protein/Fab Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Lobet, R. Dutzler
Ion-Binding Properties Of The Clc Chloride Selectivity Filter.
Embo J. V. 25 24 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:146 , GLN B:148 , GLY B:149 , GLY B:355 , PHE B:357 , ALA B:358
BINDING SITE FOR RESIDUE BR B 474
2
AC2
SOFTWARE
GLY A:146 , GLN A:148 , GLY A:149 , GLY A:355 , PHE A:357 , ALA A:358
BINDING SITE FOR RESIDUE BR A 474
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2ez0d2 (D:107-210)
1b: SCOP_d2ez0f2 (F:107-210)
2a: SCOP_d2ez0d1 (D:1-105)
2b: SCOP_d2ez0f1 (F:1-105)
3a: SCOP_d2ez0a1 (A:17-460)
3b: SCOP_d2ez0b1 (B:18-458)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
1a
d2ez0d2
D:107-210
1b
d2ez0f2
F:107-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(40)
2a
d2ez0d1
D:1-105
2b
d2ez0f1
F:1-105
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Clc chloride channel
(36)
Superfamily
:
Clc chloride channel
(36)
Family
:
Clc chloride channel
(36)
Protein domain
:
Clc chloride channel
(19)
Escherichia coli [TaxId: 562]
(18)
3a
d2ez0a1
A:17-460
3b
d2ez0b1
B:18-458
[
close SCOP info
]
CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_2ez0A00 (A:17-460)
1b: CATH_2ez0B00 (B:18-458)
2a: CATH_2ez0D02 (D:108-210)
2b: CATH_2ez0D01 (D:1-107)
2c: CATH_2ez0F01 (F:1-107)
2d: CATH_2ez0C02 (C:122-220)
2e: CATH_2ez0E02 (E:122-220)
2f: CATH_2ez0C01 (C:2-121)
2g: CATH_2ez0E01 (E:2-121)
2h: CATH_2ez0F02 (F:108-210)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Clc chloride channel
(23)
Homologous Superfamily
:
Clc chloride channel
(23)
Escherichia coli. Organism_taxid: 562.
(3)
1a
2ez0A00
A:17-460
1b
2ez0B00
B:18-458
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Escherichia coli. Organism_taxid: 562.
(10)
2a
2ez0D02
D:108-210
2b
2ez0D01
D:1-107
2c
2ez0F01
F:1-107
2d
2ez0C02
C:122-220
2e
2ez0E02
E:122-220
2f
2ez0C01
C:2-121
2g
2ez0E01
E:2-121
2h
2ez0F02
F:108-210
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (279 KB)
Header - Asym.Unit
Biol.Unit 1 (270 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2EZ0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
