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2EWC
Biol. Unit 4
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Asym.Unit (268 KB)
Biol.Unit 1 (257 KB)
Biol.Unit 2 (130 KB)
Biol.Unit 3 (131 KB)
Biol.Unit 4 (133 KB)
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(1)
Title
:
STRUCTURE OF HYPOTHETICAL PROTEIN FROM STREPTOCOCCUS PYOGENES M1 GAS, MEMBER OF HIGHLY CONSERVED YJGF FAMILY OF PROTEINS
Authors
:
B. Nocek, H. Li, S. Clancy, F. Collart, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date
:
02 Nov 05 (Deposition) - 13 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,G,K,L (1x)
Biol. Unit 3: D,E,F,H,I,J (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Yjgf Proteins Family, Conserved Hypothetical Protein, Cog0251, Putative Translation Initiation Inhibitor, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, H. Li, S. Clancy, F. Collart, A. Joachimiak
Structure Of Hypothetical Protein From Streptococcus Pyogenes M1 Gas, Member Of Highly Conserved Yjgf Family Of Proteins
To Be Published
[
close entry info
]
Hetero Components
(2, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MSE
13
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:33 , VAL A:34 , HOH A:2051
BINDING SITE FOR RESIDUE GOL A 2001
2
AC2
SOFTWARE
ASP A:8 , VAL A:9 , ARG E:90
BINDING SITE FOR RESIDUE GOL A 2002
3
AC3
SOFTWARE
GLN A:36 , ARG I:5 , ARG I:6 , HOH I:2081 , ARG J:90
BINDING SITE FOR RESIDUE GOL I 2003
4
AC5
SOFTWARE
ASP B:72 , HOH B:132 , ARG G:71 , ASP G:72 , ASN G:75 , LEU G:111 , HOH G:2081
BINDING SITE FOR RESIDUE GOL G 2005
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2ewca1 (A:3-122)
1b: SCOP_d2ewcb_ (B:)
1c: SCOP_d2ewck_ (K:)
1d: SCOP_d2ewcl_ (L:)
1e: SCOP_d2ewcc_ (C:)
1f: SCOP_d2ewcd_ (D:)
1g: SCOP_d2ewce_ (E:)
1h: SCOP_d2ewcf_ (F:)
1i: SCOP_d2ewcg_ (G:)
1j: SCOP_d2ewch_ (H:)
1k: SCOP_d2ewci_ (I:)
1l: SCOP_d2ewcj_ (J:)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
YjgF-like
(45)
Family
:
YjgF/L-PSP
(23)
Protein domain
:
Hypothetical protein SPy2060
(1)
Streptococcus pyogenes [TaxId: 1314]
(1)
1a
d2ewca1
A:3-122
1b
d2ewcb_
B:
1c
d2ewck_
K:
1d
d2ewcl_
L:
1e
d2ewcc_
C:
1f
d2ewcd_
D:
1g
d2ewce_
E:
1h
d2ewcf_
F:
1i
d2ewcg_
G:
1j
d2ewch_
H:
1k
d2ewci_
I:
1l
d2ewcj_
J:
[
close SCOP info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2ewcB00 (B:2-122)
1b: CATH_2ewcF00 (F:2-122)
1c: CATH_2ewcL00 (L:3-122)
1d: CATH_2ewcD00 (D:3-121)
1e: CATH_2ewcK00 (K:2-122)
1f: CATH_2ewcA00 (A:3-122)
1g: CATH_2ewcC00 (C:3-122)
1h: CATH_2ewcE00 (E:3-122)
1i: CATH_2ewcG00 (G:3-122)
1j: CATH_2ewcH00 (H:3-122)
1k: CATH_2ewcI00 (I:3-122)
1l: CATH_2ewcJ00 (J:3-122)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.40, no name defined]
(35)
Streptococcus pyogenes m1 gas. Organism_taxid: 160490. Strain: m1 gas.
(1)
1a
2ewcB00
B:2-122
1b
2ewcF00
F:2-122
1c
2ewcL00
L:3-122
1d
2ewcD00
D:3-121
1e
2ewcK00
K:2-122
1f
2ewcA00
A:3-122
1g
2ewcC00
C:3-122
1h
2ewcE00
E:3-122
1i
2ewcG00
G:3-122
1j
2ewcH00
H:3-122
1k
2ewcI00
I:3-122
1l
2ewcJ00
J:3-122
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (257 KB)
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