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2EUL
Biol. Unit 4
Info
Asym.Unit (114 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (107 KB)
Biol.Unit 4 (108 KB)
Biol.Unit 5 (108 KB)
Biol.Unit 6 (108 KB)
Biol.Unit 7 (108 KB)
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(1)
Title
:
STRUCTURE OF THE TRANSCRIPTION FACTOR GFH1.
Authors
:
J. Symersky, A. Perederina, M. N. Vassylyeva, V. Svetlov, I. Artsimovi D. G. Vassylyev, Riken Structural Genomics/Proteomics Initiati
Date
:
28 Oct 05 (Deposition) - 15 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Biol. Unit 5: A,B,C,D (1x)
Biol. Unit 6: A,B,C,D (1x)
Biol. Unit 7: A,B,C,D (1x)
Keywords
:
Gfh1, Transcription Factor, Rna Polymerase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Symersky, A. Perederina, M. N. Vassylyeva, V. Svetlov, I. Artsimovitch, D. G. Vassylyev
Regulation Through The Rna Polymerase Secondary Channel: Structural And Functional Variability Of The Coiled-Coil Transcription Factors.
J. Biol. Chem. V. 281 1309 2006
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
1x: ZINC ION (ZNx)
1y: ZINC ION (ZNy)
View:
Select:
Label:
Sorry, no Info available
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:49 , HOH A:426 , HOH A:449 , HIS D:132
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
ASP A:63 , GLU A:66 , ZN A:416 , ASP B:67
BINDING SITE FOR RESIDUE ZN A 402
03
AC3
SOFTWARE
GLU A:109 , HOH A:463 , GLU D:24
BINDING SITE FOR RESIDUE ZN A 403
04
AC4
SOFTWARE
GLU A:20 , GLU A:24 , HOH A:434 , ALA B:2
BINDING SITE FOR RESIDUE ZN A 404
05
AC5
SOFTWARE
ZN A:413 , ASP B:63 , ZN B:414 , HOH B:524
BINDING SITE FOR RESIDUE ZN B 405
06
AC6
SOFTWARE
ASP A:45 , HOH A:439 , ASP C:45
BINDING SITE FOR RESIDUE ZN C 406
07
AC7
SOFTWARE
ARG B:14 , HIS B:132 , GLU C:49 , HOH C:510
BINDING SITE FOR RESIDUE ZN C 407
08
AC8
SOFTWARE
ARG C:23 , GLU C:66 , ZN C:423 , HOH C:426 , ASP D:67
BINDING SITE FOR RESIDUE ZN C 408
09
AC9
SOFTWARE
GLU B:24 , GLN B:27 , LEU C:85 , GLU C:109
BINDING SITE FOR RESIDUE ZN C 409
10
BC1
SOFTWARE
ARG A:21 , HOH A:499 , GLU C:20 , GLU C:24 , ALA D:2
BINDING SITE FOR RESIDUE ZN C 400
11
BC2
SOFTWARE
MET C:1 , ASP C:67 , ZN C:421 , ASP D:63
BINDING SITE FOR RESIDUE ZN C 411
12
BC3
SOFTWARE
HOH C:483 , ASP D:114 , LYS D:118
BINDING SITE FOR RESIDUE ZN C 412
13
BC4
SOFTWARE
ASP A:67 , HOH A:425 , ARG B:23 , GLU B:66 , ZN B:405
BINDING SITE FOR RESIDUE ZN A 413
14
BC5
SOFTWARE
ASP B:63 , ZN B:405 , HOH B:459
BINDING SITE FOR RESIDUE ZN B 414
15
BC6
SOFTWARE
ASP C:63 , ASP D:63 , ZN D:422
BINDING SITE FOR RESIDUE ZN C 415
16
BC7
SOFTWARE
ARG A:23 , GLU A:66 , ZN A:402 , ASP B:67 , ARG B:71
BINDING SITE FOR RESIDUE ZN A 416
17
BC8
SOFTWARE
ASP A:63 , GLU A:66 , ASP B:63 , GLU B:66
BINDING SITE FOR RESIDUE ZN A 417
18
BC9
SOFTWARE
GLU D:54 , ARG D:57
BINDING SITE FOR RESIDUE ZN D 418
19
CC1
SOFTWARE
HIS A:132 , ASP A:136 , HOH A:483
BINDING SITE FOR RESIDUE ZN A 419
20
CC2
SOFTWARE
GLU B:54 , HOH B:440
BINDING SITE FOR RESIDUE ZN B 420
21
CC3
SOFTWARE
ASP C:67 , ZN C:411 , ILE D:62 , GLU D:66 , HOH D:470
BINDING SITE FOR RESIDUE ZN C 421
22
CC4
SOFTWARE
ZN C:415 , ASP D:63 , HOH D:510
BINDING SITE FOR RESIDUE ZN D 422
23
CC5
SOFTWARE
ASP C:63 , ZN C:408
BINDING SITE FOR RESIDUE ZN C 423
24
CC6
SOFTWARE
PRO A:143 , ASP B:114
BINDING SITE FOR RESIDUE ZN A 424
25
CC7
SOFTWARE
HIS C:132
BINDING SITE FOR RESIDUE ZN C 425
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GREAB_2 (A:120-136,B:120-136,C:120-136,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GREAB_2
PS00830
Prokaryotic transcription elongation factors signature 2.
GFH1_THET8
120-136
4
A:120-136
B:120-136
C:120-136
D:120-136
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2eula1 (A:1-77)
1b: SCOP_d2eulb1 (B:1-77)
1c: SCOP_d2eulc1 (C:1-77)
1d: SCOP_d2euld1 (D:1-77)
2a: SCOP_d2eula2 (A:78-156)
2b: SCOP_d2eulb2 (B:78-156)
2c: SCOP_d2eulc2 (C:78-156)
2d: SCOP_d2euld2 (D:78-156)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Long alpha-hairpin
(315)
Superfamily
:
GreA transcript cleavage protein, N-terminal domain
(5)
Family
:
GreA transcript cleavage protein, N-terminal domain
(4)
Protein domain
:
GreA transcript cleavage protein, N-terminal domain
(4)
Thermus thermophilus [TaxId: 274]
(2)
1a
d2eula1
A:1-77
1b
d2eulb1
B:1-77
1c
d2eulc1
C:1-77
1d
d2euld1
D:1-77
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
GreA transcript cleavage factor, C-terminal domain
(4)
Protein domain
:
GreA transcript cleavage factor, C-terminal domain
(4)
Thermus thermophilus [TaxId: 274]
(2)
2a
d2eula2
A:78-156
2b
d2eulb2
B:78-156
2c
d2eulc2
C:78-156
2d
d2euld2
D:78-156
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (114 KB)
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Biol.Unit 1 (56 KB)
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Biol.Unit 2 (55 KB)
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Biol.Unit 3 (107 KB)
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Biol.Unit 4 (108 KB)
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Biol.Unit 5 (108 KB)
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