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2EUD
Biol. Unit 1
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Asym.Unit (117 KB)
Biol.Unit 1 (219 KB)
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(1)
Title
:
STRUCTURES OF YEAST RIBONUCLEOTIDE REDUCTASE I COMPLEXED WITH LIGANDS AND SUBUNIT PEPTIDES
Authors
:
C. Dealwis, H. Xu, C. Faber, T. Uchiki, J. W. Fairman, J. Racca
Date
:
28 Oct 05 (Deposition) - 07 Mar 06 (Release) - 17 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ribonucleotide Reductase, Ligand Interaction, Subunit Assembly, Oxidoreductase
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Xu, C. Faber, T. Uchiki, J. Racca, C. Dealwis
Structures Of Eukaryotic Ribonucleotide Reductase I Define Gemcitabine Diphosphate Binding And Subunit Assembly.
Proc. Natl. Acad. Sci. Usa V. 103 4028 2006
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Hetero Components
(2, 4)
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All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: GEMCITABINE DIPHOSPHATE (GCQa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
GCQ
2
Ligand/Ion
GEMCITABINE DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
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2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ANP A:890
BINDING SITE FOR RESIDUE MG A 889
2
AC2
SOFTWARE
ASP A:226 , SER A:227 , ILE A:228 , ILE A:231 , LYS A:243 , ARG A:256 , ILE A:262 , ALA A:263 , TYR A:285 , VAL A:286 , ASP A:287 , GLN A:288 , GLY A:289 , MG A:889 , HOH A:916 , HOH A:927 , HOH A:935 , HOH A:958 , HOH A:1091
BINDING SITE FOR RESIDUE ANP A 890
3
AC3
SOFTWARE
ALA A:201 , SER A:202 , PHE A:206 , SER A:217 , CYS A:218 , GLY A:246 , GLY A:247 , ARG A:293 , LEU A:427 , CYS A:428 , MET A:606 , PRO A:607 , THR A:608 , ALA A:609 , SER A:610 , THR A:611 , HOH A:1024 , HOH A:1060 , HOH A:1089
BINDING SITE FOR RESIDUE GCQ A 891
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PROSITE Patterns/Profiles
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1: RIBORED_LARGE (A:585-607)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_LARGE
PS00089
Ribonucleotide reductase large subunit signature.
RIR1_YEAST
585-607
2
A:585-607
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