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2ETX
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MDC1 TANDEM BRCT DOMAINS
Authors
:
E. Wasielewski, Y. Kim, A. Joachimiak, J. R. Thompson, G. Mer
Date
:
27 Oct 05 (Deposition) - 15 Nov 05 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tandem Brct Domains Histone Gamma-H2Ax, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Singh, T. D. Wiltshire, J. R. Thompson, G. Mer, F. J. Couch
Molecular Basis For The Association Of Microcephalin (Mcph1 Protein With The Cell Division Cycle Protein 27 (Cdc27) Subunit Of The Anaphase-Promoting Complex.
J. Biol. Chem. V. 287 2854 2012
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051170 (R1904Q, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051170
R
1904
Q
MDC1_HUMAN
Polymorphism
28994876
A/B
R
1904
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BRCT (A:1892-1970,B:1892-1970)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
MDC1_HUMAN
1892-1970
2
A:1892-1970
B:1892-1970
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Exons
(5, 10)
Info
All Exons
Exon 1.47aq (A:1892-1894 | B:1891-1894)
Exon 1.47au (A:1895-1955 | B:1895-1955)
Exon 1.47bg (A:1956-1997 | B:1956-1997)
Exon 1.47bi (A:1998-2034 | B:1998-2034)
Exon 1.51d (A:2035-2085 | B:2035-2085)
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All Exon Boundaries
1: Boundary 1.47d/1.47aq
2: Boundary 1.47aq/1.47au
3: Boundary 1.47au/1.47bg
4: Boundary 1.47bg/1.47bi
5: Boundary 1.47bi/1.51d
6: Boundary 1.51d/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.37a
ENST00000376406
37a
ENSE00001835419
chr6:
30685666-30685022
645
MDC1_HUMAN
-
0
0
-
-
1.40
ENST00000376406
40
ENSE00001707939
chr6:
30682955-30682817
139
MDC1_HUMAN
1-46
46
0
-
-
1.41i
ENST00000376406
41i
ENSE00002149164
chr6:
30681960-30681580
381
MDC1_HUMAN
46-173
128
0
-
-
1.41j
ENST00000376406
41j
ENSE00001677117
chr6:
30681494-30681425
70
MDC1_HUMAN
173-196
24
0
-
-
1.41n
ENST00000376406
41n
ENSE00001672479
chr6:
30681131-30679651
1481
MDC1_HUMAN
196-690
495
0
-
-
1.41v
ENST00000376406
41v
ENSE00001732269
chr6:
30679503-30679444
60
MDC1_HUMAN
690-710
21
0
-
-
1.42b
ENST00000376406
42b
ENSE00001773945
chr6:
30679281-30679189
93
MDC1_HUMAN
710-741
32
0
-
-
1.45j
ENST00000376406
45j
ENSE00001790042
chr6:
30676134-30675343
792
MDC1_HUMAN
741-1005
265
0
-
-
1.45q
ENST00000376406
45q
ENSE00001682597
chr6:
30675231-30675161
71
MDC1_HUMAN
1005-1028
24
0
-
-
1.47d
ENST00000376406
47d
ENSE00001757825
chr6:
30673875-30671398
2478
MDC1_HUMAN
1029-1854
826
0
-
-
1.47aq
ENST00000376406
47aq
ENSE00001680569
chr6:
30671314-30671195
120
MDC1_HUMAN
1855-1894
40
2
A:1892-1894
B:1891-1894
3
4
1.47au
ENST00000376406
47au
ENSE00001713998
chr6:
30671063-30670881
183
MDC1_HUMAN
1895-1955
61
2
A:1895-1955
B:1895-1955
61
61
1.47bg
ENST00000376406
47bg
ENSE00001800762
chr6:
30670654-30670529
126
MDC1_HUMAN
1956-1997
42
2
A:1956-1997
B:1956-1997
42
42
1.47bi
ENST00000376406
47bi
ENSE00001704145
chr6:
30670440-30670330
111
MDC1_HUMAN
1998-2034
37
2
A:1998-2034
B:1998-2034
37
37
1.51d
ENST00000376406
51d
ENSE00001891428
chr6:
30668409-30667584
826
MDC1_HUMAN
2035-2089
55
2
A:2035-2085
B:2035-2085
51
51
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Pfam Domains
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Asym.Unit (74 KB)
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