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Getting 'Exon' information from database.
2ETL
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (145 KB)
Biol.Unit 4 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UBIQUITIN CARBOXY-TERMINAL HYDROLASE L1 (UCH-L1)
Authors
:
C. Das, Q. Q. Hoang, C. A. Kreinbring, S. J. Luchansky, R. K. Meray, S. S. R P. T. Lansbury, D. Ringe, G. A. Petsko
Date
:
27 Oct 05 (Deposition) - 28 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: B (4x)
Biol. Unit 4: A (4x)
Keywords
:
Deubiquitinating Thiol Hydrolase, Hydrolase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Das, Q. Q. Hoang, C. A. Kreinbring, S. J. Luchansky, R. K. Meray, S. S. Ray, P. T. Lansbury, D. Ringe, G. A. Petsko
Structural Basis For Conformational Plasticity Of The Parkinson'S Disease-Associated Ubiquitin Hydrolase Uch-L1.
Proc. Natl. Acad. Sci. Usa V. 103 4675 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:84 , ASN B:88
BINDING SITE FOR RESIDUE CL B 3001
2
AC2
SOFTWARE
ASP B:169
BINDING SITE FOR RESIDUE CL B 3002
3
AC3
SOFTWARE
GLN A:84 , ASN A:88
BINDING SITE FOR RESIDUE CL A 3003
4
AC4
SOFTWARE
ASP A:169
BINDING SITE FOR RESIDUE CL A 3004
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_070875 (E7A, chain A/B, )
2: VAR_015677 (S18Y, chain A/B, )
3: VAR_015678 (I93M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070875
E
7
A
UCHL1_HUMAN
Disease (NDGOA)
---
A/B
E
7
A
2
UniProt
VAR_015677
S
18
Y
UCHL1_HUMAN
Polymorphism
5030732
A/B
S
18
Y
3
UniProt
VAR_015678
I
93
M
UCHL1_HUMAN
Disease (PARK5)
---
A/B
I
93
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UCH_1 (A:84-100,B:84-100)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UCH_1
PS00140
Ubiquitin carboxyl-terminal hydrolase family 1 cysteine active-site.
UCHL1_HUMAN
84-100
2
A:84-100
B:84-100
[
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Exons
(9, 18)
Info
All Exons
Exon 1.4a (A:1-11 | B:1-11)
Exon 1.5a (A:12-15 | B:12-15)
Exon 1.5d (A:16-58 | B:16-58)
Exon 1.6b (A:59-109 | B:59-109)
Exon 1.7a (A:109-137 | B:109-137)
Exon 1.8 (A:138-153 | B:138-153)
Exon 1.9a (A:154-176 | B:154-176)
Exon 1.10a (A:176-195 | B:176-195)
Exon 1.11h (A:196-223 | B:196-223)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.4a
02: Boundary 1.4a/1.5a
03: Boundary 1.5a/1.5d
04: Boundary 1.5d/1.6b
05: Boundary 1.6b/1.7a
06: Boundary 1.7a/1.8
07: Boundary 1.8/1.9a
08: Boundary 1.9a/1.10a
09: Boundary 1.10a/1.11h
10: Boundary 1.11h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000284440
4a
ENSE00001014976
chr4:
41258850-41259026
177
UCHL1_HUMAN
1-11
11
2
A:1-11
B:1-11
11
11
1.5a
ENST00000284440
5a
ENSE00001700600
chr4:
41259132-41259143
12
UCHL1_HUMAN
12-15
4
2
A:12-15
B:12-15
4
4
1.5d
ENST00000284440
5d
ENSE00002143077
chr4:
41259626-41259754
129
UCHL1_HUMAN
16-58
43
2
A:16-58
B:16-58
43
43
1.6b
ENST00000284440
6b
ENSE00001720890
chr4:
41262664-41262814
151
UCHL1_HUMAN
59-109
51
2
A:59-109
B:59-109
51
51
1.7a
ENST00000284440
7a
ENSE00001014975
chr4:
41263732-41263817
86
UCHL1_HUMAN
109-137
29
2
A:109-137
B:109-137
29
29
1.8
ENST00000284440
8
ENSE00001014973
chr4:
41263893-41263940
48
UCHL1_HUMAN
138-153
16
2
A:138-153
B:138-153
16
16
1.9a
ENST00000284440
9a
ENSE00001014969
chr4:
41265242-41265308
67
UCHL1_HUMAN
154-176
23
2
A:154-176
B:154-176
23
23
1.10a
ENST00000284440
10a
ENSE00001014974
chr4:
41266120-41266178
59
UCHL1_HUMAN
176-195
20
2
A:176-195
B:176-195
20
20
1.11h
ENST00000284440
11h
ENSE00001852993
chr4:
41270004-41270446
443
UCHL1_HUMAN
196-223
28
2
A:196-223
B:196-223
28
28
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2etlb_ (B:)
2a: SCOP_d2etla1 (A:1-223)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d2etlb_
B:
Family
:
Ubiquitin carboxyl-terminal hydrolase UCH-L
(10)
Protein domain
:
Ubiquitin carboxyl-terminal hydrolase isozyme l1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2etla1
A:1-223
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2etlA00 (A:1-223)
1b: CATH_2etlB00 (B:1-223)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Ubiquitin C-terminal Hydrolase UCH-l3
(8)
Homologous Superfamily
:
Ubiquitin C-terminal Hydrolase Uch-l3
(8)
Human (Homo sapiens)
(7)
1a
2etlA00
A:1-223
1b
2etlB00
B:1-223
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (77 KB)
Header - Asym.Unit
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Biol.Unit 3 (145 KB)
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