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2ETE
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (198 KB)
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(1)
Title
:
RECOMBINANT OXALATE OXIDASE IN COMPLEX WITH GLYCOLATE
Authors
:
O. Opaleye, R. -S. Rose, M. M. Whittaker, E. -J. Woo, J. W. Whittaker, R. W. Pickersgill
Date
:
27 Oct 05 (Deposition) - 22 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Double Stranded Beta-Helix, Cupin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Opaleye, R. -S. Rose, M. M. Whittaker, E. -J. Woo, J. W. Whittaker, R. W. Pickersgill
Structural And Spectroscopic Studies Shed Light On The Mechanism Of Oxalate Oxidase
J. Biol. Chem. V. 281 6428 2006
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GLYOXYLIC ACID (GLVa)
1b: GLYOXYLIC ACID (GLVb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GLV
2
Ligand/Ion
GLYOXYLIC ACID
2
MN
2
Ligand/Ion
MANGANESE (II) ION
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:47
BINDING SITE FOR RESIDUE NAG A 403
2
AC2
SOFTWARE
ASN B:47 , SER B:49 , PRO B:173 , THR B:176 , GLU B:191 , LYS B:194 , HOH B:482 , HOH B:494
BINDING SITE FOR RESIDUE NAG B 405
3
AC3
SOFTWARE
HIS A:88 , HIS A:90 , GLU A:95 , HIS A:137 , GLV A:404
BINDING SITE FOR RESIDUE MN A 202
4
AC4
SOFTWARE
HIS B:88 , HIS B:90 , GLU B:95 , HIS B:137 , GLV B:406
BINDING SITE FOR RESIDUE MN B 202
5
AC5
SOFTWARE
ASN A:75 , VAL A:77 , ASN A:85 , HIS A:88 , HIS A:90 , GLU A:95 , MET A:149 , PHE A:153 , MN A:202 , HOH A:530
BINDING SITE FOR RESIDUE GLV A 404
6
AC6
SOFTWARE
ASN B:75 , VAL B:77 , ASN B:85 , HIS B:88 , HIS B:90 , GLU B:95 , MET B:149 , PHE B:153 , ILE B:160 , MN B:202
BINDING SITE FOR RESIDUE GLV B 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GERMIN (A:83-96,B:83-96)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GERMIN
PS00725
Germin family signature.
OXO1_HORVU
83-96
2
A:83-96
B:83-96
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2etea1 (A:1-201)
1b: SCOP_d2eteb_ (B:)
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Superfamilies
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Germin/Seed storage 7S protein
(34)
Protein domain
:
Germin
(4)
Barley (Hordeum vulgare) [TaxId: 4513]
(4)
1a
d2etea1
A:1-201
1b
d2eteb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2eteA00 (A:1-201)
1b: CATH_2eteB00 (B:1-201)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Hordeum vulgare. Organism_taxid: 4513.
(2)
1a
2eteA00
A:1-201
1b
2eteB00
B:1-201
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (75 KB)
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