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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2ESV
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
STRUCTURE OF THE HLA-E-VMAPRTLIL/KK50.4 TCR COMPLEX
Authors
:
H. L. Hoare, J. Rossjohn
Date
:
27 Oct 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,D,E,P
Biol. Unit 1: A,B,D,E,P (1x)
Keywords
:
T Cell Receptor, Tcr, Hla-E, Cmv, Pmhc/Tcr Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. L. Hoare, L. C. Sullivan, G. Pietra, C. S. Clements, E. J. Lee, L. K. Ely, T. Beddoe, M. Falco, L. Kjer-Nielsen, H. H. Reid, J. Mccluskey, L. Moretta, J. Rossjohn, A. G. Brooks
Structural Basis For A Major Histocompatibility Complex Class Ib-Restricted T Cell Response
Nat. Immunol. V. 7 256 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
5
Ligand/Ion
IODIDE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN D:36 , ARG E:37
BINDING SITE FOR RESIDUE IOD D 1001
2
AC2
SOFTWARE
GLN E:183 , ARG E:190
BINDING SITE FOR RESIDUE IOD E 1002
3
AC3
SOFTWARE
GLN E:228 , ARG E:230
BINDING SITE FOR RESIDUE IOD E 1004
4
AC4
SOFTWARE
GLY B:43
BINDING SITE FOR RESIDUE IOD B 1005
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059510 (N77K, chain A, )
2: VAR_004395 (G83R, chain A, )
3: VAR_016651 (R107G, chain A, )
4: VAR_016652 (R157G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059510
N
98
K
HLAE_HUMAN
Polymorphism
1059510
A
N
77
K
2
UniProt
VAR_004395
G
104
R
HLAE_HUMAN
Polymorphism
---
A
G
83
R
3
UniProt
VAR_016651
R
128
G
HLAE_HUMAN
Polymorphism
1264457
A
R
107
G
4
UniProt
VAR_016652
R
178
G
HLAE_HUMAN
Polymorphism
41562314
A
R
157
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
HLAE_HUMAN
278-284
1
A:257-263
[
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Exons
(4, 4)
Info
All Exons
Exon 1.1d (A:2-91)
Exon 1.1p (A:91-183)
Exon 1.1x (A:183-275 (gaps))
Exon 1.1ad (A:275-276)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.1d
2: Boundary 1.1d/1.1p
3: Boundary 1.1p/1.1x
4: Boundary 1.1x/1.1ad
5: Boundary 1.1ad/1.1an
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000383597
1a
ENSE00001870885
HSCHR6_MHC_QBL:30446762-30446890
129
HLAE_HUMAN
1-22
22
0
-
-
1.1d
ENST00000383597
1d
ENSE00001611849
HSCHR6_MHC_QBL:30447021-30447290
270
HLAE_HUMAN
22-112
91
1
A:2-91
90
1.1p
ENST00000383597
1p
ENSE00001745192
HSCHR6_MHC_QBL:30447535-30447810
276
HLAE_HUMAN
112-204
93
1
A:91-183
93
1.1x
ENST00000383597
1x
ENSE00001623966
HSCHR6_MHC_QBL:30448432-30448707
276
HLAE_HUMAN
204-296
93
1
A:183-275 (gaps)
93
1.1ad
ENST00000383597
1ad
ENSE00001618059
HSCHR6_MHC_QBL:30448832-30448948
117
HLAE_HUMAN
296-335
40
1
A:275-276
2
1.1an
ENST00000383597
1an
ENSE00001758462
HSCHR6_MHC_QBL:30449699-30449731
33
HLAE_HUMAN
335-346
12
0
-
-
1.2
ENST00000383597
2
ENSE00001707049
HSCHR6_MHC_QBL:30449836-30449878
43
HLAE_HUMAN
346-358
13
0
-
-
1.3b
ENST00000383597
3b
ENSE00001598949
HSCHR6_MHC_QBL:30450044-30451500
1457
HLAE_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(7, 7)
Info
All SCOP Domains
1a: SCOP_d2esvb_ (B:)
2a: SCOP_d2esva1 (A:182-274)
3a: SCOP_d2esvd2 (D:117-205)
4a: SCOP_d2esve2 (E:119-247)
5a: SCOP_d2esvd1 (D:4-116)
6a: SCOP_d2esve1 (E:3-118)
7a: SCOP_d2esva2 (A:2-181)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d2esvb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d2esva1
A:182-274
Protein domain
:
T-cell antigen receptor
(81)
Human (Homo sapiens), alpha-chain [TaxId: 9606]
(20)
3a
d2esvd2
D:117-205
Human (Homo sapiens), beta-chain [TaxId: 9606]
(29)
4a
d2esve2
E:119-247
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Human (Homo sapiens), alpha-chain [TaxId: 9606]
(21)
5a
d2esvd1
D:4-116
Human (Homo sapiens), beta-chain [TaxId: 9606]
(29)
6a
d2esve1
E:3-118
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-E [TaxId: 9606]
(8)
7a
d2esva2
A:2-181
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2esvA01 (A:2-181)
2a: CATH_2esvB00 (B:0-99)
2b: CATH_2esvA02 (A:182-272)
2c: CATH_2esvD01 (D:4-115)
2d: CATH_2esvE01 (E:3-118)
2e: CATH_2esvE02 (E:119-247)
View:
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)
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)
Topologies
(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
2esvA01
A:2-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
2esvB00
B:0-99
2b
2esvA02
A:182-272
2c
2esvD01
D:4-115
2d
2esvE01
E:3-118
2e
2esvE02
E:119-247
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (143 KB)
Header - Asym.Unit
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