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2ESL
Biol. Unit 9
Info
Asym.Unit (206 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 10 (70 KB)
Biol.Unit 11 (68 KB)
Biol.Unit 12 (68 KB)
Biol.Unit 2 (37 KB)
Biol.Unit 3 (37 KB)
Biol.Unit 4 (37 KB)
Biol.Unit 5 (36 KB)
Biol.Unit 6 (36 KB)
Biol.Unit 7 (195 KB)
Biol.Unit 8 (102 KB)
Biol.Unit 9 (99 KB)
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Title
:
HUMAN CYCLOPHILIN C IN COMPLEX WITH CYCLOSPORIN A
Authors
:
J. R. Walker, T. Davis, E. M. Newman, P. J. Finerty Jr. , F. Mackenzie, J. M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, S. Dhe-Pagano Structural Genomics Consortium (Sgc)
Date
:
26 Oct 05 (Deposition) - 13 Dec 05 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,I,J,K,L,M,N
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,J (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,L (1x)
Biol. Unit 5: E,M (1x)
Biol. Unit 6: F,N (1x)
Biol. Unit 7: A,B,C,D,E,F,I,J,K,L,M,N (1x)
Biol. Unit 8: A,B,C,I,J,K (1x)
Biol. Unit 9: D,E,F,L,M,N (1x)
Biol. Unit 10: B,D,J,L (1x)
Biol. Unit 11: A,E,I,M (1x)
Biol. Unit 12: C,F,K,N (1x)
Keywords
:
Isomerase-Immunosuppressant Complex, Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosupressant, Cyclophilin, Sgc, Structural Genomics, Structural Genomics Consortium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, T. Davis, E. M. Newman, P. J. Finerty Jr, F. Mackenzie, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, S. Dhe-Paganon
Structural Analysis Of Cyclophilin C Complexed With Cyclosporin Derivatives
To Be Published
[
close entry info
]
Hetero Components
(7, 30)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
1c: ALPHA-AMINOBUTYRIC ACID (ABAc)
1d: ALPHA-AMINOBUTYRIC ACID (ABAd)
1e: ALPHA-AMINOBUTYRIC ACID (ABAe)
1f: ALPHA-AMINOBUTYRIC ACID (ABAf)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
2c: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTc)
2d: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTd)
2e: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTe)
2f: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTf)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
4a: D-ALANINE (DALa)
4b: D-ALANINE (DALb)
4c: D-ALANINE (DALc)
4d: D-ALANINE (DALd)
4e: D-ALANINE (DALe)
4f: D-ALANINE (DALf)
5a: N-METHYLLEUCINE (MLEa)
5b: N-METHYLLEUCINE (MLEb)
5c: N-METHYLLEUCINE (MLEc)
5d: N-METHYLLEUCINE (MLEd)
5e: N-METHYLLEUCINE (MLEe)
5f: N-METHYLLEUCINE (MLEf)
5g: N-METHYLLEUCINE (MLEg)
5h: N-METHYLLEUCINE (MLEh)
5i: N-METHYLLEUCINE (MLEi)
5j: N-METHYLLEUCINE (MLEj)
5k: N-METHYLLEUCINE (MLEk)
5l: N-METHYLLEUCINE (MLEl)
5m: N-METHYLLEUCINE (MLEm)
5n: N-METHYLLEUCINE (MLEn)
5o: N-METHYLLEUCINE (MLEo)
5p: N-METHYLLEUCINE (MLEp)
5q: N-METHYLLEUCINE (MLEq)
5r: N-METHYLLEUCINE (MLEr)
5s: N-METHYLLEUCINE (MLEs)
5t: N-METHYLLEUCINE (MLEt)
5u: N-METHYLLEUCINE (MLEu)
5v: N-METHYLLEUCINE (MLEv)
5w: N-METHYLLEUCINE (MLEw)
5x: N-METHYLLEUCINE (MLEx)
6a: N-METHYLVALINE (MVAa)
6b: N-METHYLVALINE (MVAb)
6c: N-METHYLVALINE (MVAc)
6d: N-METHYLVALINE (MVAd)
6e: N-METHYLVALINE (MVAe)
6f: N-METHYLVALINE (MVAf)
7a: SARCOSINE (SARa)
7b: SARCOSINE (SARb)
7c: SARCOSINE (SARc)
7d: SARCOSINE (SARd)
7e: SARCOSINE (SARe)
7f: SARCOSINE (SARf)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
9a: ZINC ION (ZNa)
9b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
3
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
3
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
DAL
3
Mod. Amino Acid
D-ALANINE
5
MLE
12
Mod. Amino Acid
N-METHYLLEUCINE
6
MVA
3
Mod. Amino Acid
N-METHYLVALINE
7
SAR
3
Mod. Amino Acid
SARCOSINE
8
SO4
3
Ligand/Ion
SULFATE ION
9
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ASP D:93 , ASP E:93 , ASP F:93
BINDING SITE FOR RESIDUE CA D 2
02
AC3
SOFTWARE
GLU E:115 , GLU F:68 , GLU F:77
BINDING SITE FOR RESIDUE CA F 3
03
AC5
SOFTWARE
HIS D:174 , HOH D:2001 , HIS E:174 , HIS F:174
BINDING SITE FOR RESIDUE ZN D 5
04
AC9
SOFTWARE
ASP D:168 , GLY D:169 , MET D:170 , HOH D:2002 , HOH D:2003 , GLN E:179 , ALA E:180
BINDING SITE FOR RESIDUE SO4 D 9
05
BC1
SOFTWARE
ASP E:168 , GLY E:169 , MET E:170 , HOH E:2001 , HOH E:2002 , GLN F:179 , ALA F:180 , HOH F:2069
BINDING SITE FOR RESIDUE SO4 E 10
06
BC2
SOFTWARE
GLN D:179 , ALA D:180 , HOH D:2124 , ASP F:168 , GLY F:169 , MET F:170 , HOH F:2001
BINDING SITE FOR RESIDUE SO4 F 11
07
BC3
SOFTWARE
ARG A:89 , PHE A:94 , GLN A:97 , GLY A:106 , THR A:107 , ALA A:135 , ASN A:136 , ALA A:137 , GLN A:145 , PHE A:147 , TRP A:155 , HIS A:160 , PRO E:139 , TRP E:155 , HOH I:2001 , HOH I:2002 , HOH I:2003 , HOH I:2004 , HOH I:2005 , HOH I:2006 , HOH I:2007 , HOH I:2008 , MLE M:3 , MLE M:10 , ALA M:11
BINDING SITE FOR CHAIN I OF CYCLOSPORIN A
08
BC4
SOFTWARE
ARG B:89 , PHE B:94 , GLN B:97 , GLY B:106 , ALA B:135 , ASN B:136 , ALA B:137 , GLN B:145 , PHE B:147 , TRP B:155 , HIS B:160 , HOH B:2061 , TRP D:155 , HOH J:2002 , HOH J:2003 , HOH J:2004 , HOH J:2007 , HOH J:2008 , BMT L:5 , MLE L:10 , ALA L:11
BINDING SITE FOR CHAIN J OF CYCLOSPORIN A
09
BC5
SOFTWARE
ARG C:89 , PHE C:94 , GLN C:97 , GLY C:106 , ALA C:135 , ASN C:136 , ALA C:137 , GLN C:145 , PHE C:147 , TRP C:155 , HIS C:160 , TRP F:155 , HOH K:2001 , HOH K:2002 , HOH K:2003 , HOH K:2004 , HOH K:2005 , HOH K:2006 , MLE N:3 , BMT N:5 , MLE N:10
BINDING SITE FOR CHAIN K OF CYCLOSPORIN A
10
BC6
SOFTWARE
TRP B:155 , ARG D:89 , PHE D:94 , GLN D:97 , GLY D:106 , ALA D:135 , ASN D:136 , GLN D:145 , PHE D:147 , TRP D:155 , HIS D:160 , MLE J:3 , MLE J:10 , HOH J:2007 , HOH L:2001 , HOH L:2002 , HOH L:2003 , HOH L:2004
BINDING SITE FOR CHAIN L OF CYCLOSPORIN A
11
BC7
SOFTWARE
PRO A:139 , TRP A:155 , LYS A:159 , ARG E:89 , PHE E:94 , GLN E:97 , GLY E:106 , ALA E:135 , ASN E:136 , GLN E:145 , PHE E:147 , TRP E:155 , HIS E:160 , MLE I:3 , BMT I:5 , MLE I:10 , ALA I:11 , HOH I:2007 , HOH M:2001 , HOH M:2002 , HOH M:2003 , HOH M:2004 , HOH M:2005
BINDING SITE FOR CHAIN M OF CYCLOSPORIN A
12
BC8
SOFTWARE
ALA C:137 , TRP C:155 , ARG F:89 , PHE F:94 , GLN F:97 , GLY F:106 , THR F:107 , ALA F:135 , ASN F:136 , GLN F:145 , PHE F:147 , TRP F:155 , HIS F:160 , BMT K:5 , MLE K:10 , ALA K:11 , HOH K:2005 , HOH N:2001 , HOH N:2003 , HOH N:2004 , HOH N:2005 , HOH N:2006
BINDING SITE FOR CHAIN N OF CYCLOSPORIN A
[
close Site info
]
SAPs(SNPs)/Variants
(3, 9)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051770 (K86R, chain D/E/F, )
2: VAR_060712 (H160L, chain D/E/F, )
3: VAR_024319 (N190S, chain D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051770
K
86
R
PPIC_HUMAN
Polymorphism
34341374
D/E/F
K
86
R
2
UniProt
VAR_060712
H
160
L
PPIC_HUMAN
Polymorphism
---
D/E/F
H
160
L
3
UniProt
VAR_024319
N
190
S
PPIC_HUMAN
Polymorphism
451195
D/E/F
N
190
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (D:41-198,E:41-198,F:41-198)
2: CSA_PPIASE_1 (D:82-99,E:82-99,F:82-99)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIC_HUMAN
41-198
3
-
-
-
D:41-198
E:41-198
F:41-198
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIC_HUMAN
82-99
3
-
-
-
D:82-99
E:82-99
F:82-99
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2esla1 (A:32-212)
1b: SCOP_d2eslb_ (B:)
1c: SCOP_d2eslc_ (C:)
1d: SCOP_d2esld_ (D:)
1e: SCOP_d2esle_ (E:)
1f: SCOP_d2eslf_ (F:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), variant C [TaxId: 9606]
(1)
1a
d2esla1
A:32-212
1b
d2eslb_
B:
1c
d2eslc_
C:
1d
d2esld_
D:
1e
d2esle_
E:
1f
d2eslf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2eslA00 (A:32-212)
1b: CATH_2eslB00 (B:32-212)
1c: CATH_2eslC00 (C:32-212)
1d: CATH_2eslD00 (D:32-212)
1e: CATH_2eslE00 (E:32-212)
1f: CATH_2eslF00 (F:32-212)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
1a
2eslA00
A:32-212
1b
2eslB00
B:32-212
1c
2eslC00
C:32-212
1d
2eslD00
D:32-212
1e
2eslE00
E:32-212
1f
2eslF00
F:32-212
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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