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2ERO
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (141 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VASCULAR APOPTOSIS-INDUCING PROTEIN-1(ORTHORHOMBIC CRYSTAL FORM)
Authors
:
S. Takeda, T. Igarashi, S. Araki
Date
:
25 Oct 05 (Deposition) - 20 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Metalloprotease, Disintegrin, Calcium-Binding, Adam, Svmp, Mdc Protein, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Takeda, T. Igarashi, H. Mori, S. Araki
Crystal Structures Of Vap1 Reveal Adams' Mdc Domain Architecture And Its Unique C-Shaped Scaffold
Embo J. V. 25 2388 2006
(for further references see the
PDB file header
)
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: COBALT (III) ION (3COa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3CO
1
Ligand/Ion
COBALT (III) ION
2
CA
4
Ligand/Ion
CALCIUM ION
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:2 , ASN A:218 , THR A:220 , ALA A:221 , THR A:224 , ARG B:453
BINDING SITE FOR RESIDUE NAG A 1
02
AC2
SOFTWARE
NAG A:1 , GLN B:442
BINDING SITE FOR RESIDUE NAG A 2
03
AC3
SOFTWARE
NAG B:4 , ASN B:218 , ALA B:221 , GLN B:543
BINDING SITE FOR RESIDUE NAG B 3
04
AC4
SOFTWARE
NAG B:3
BINDING SITE FOR RESIDUE NAG B 4
05
AC5
SOFTWARE
HIS A:335 , HIS A:339 , HIS A:345 , HOH A:814
BINDING SITE FOR RESIDUE ZN A 700
06
AC6
SOFTWARE
VAL A:405 , ASN A:408 , PHE A:410 , GLU A:412 , GLU A:415 , ASP A:418
BINDING SITE FOR RESIDUE CA A 701
07
AC7
SOFTWARE
ASP A:469 , MET A:470 , ASP A:472 , ASP A:483 , ARG A:484 , HOH A:815
BINDING SITE FOR RESIDUE CA A 702
08
AC8
SOFTWARE
HIS A:238 , HIS A:243 , HOH A:712
BINDING SITE FOR RESIDUE 3CO A 703
09
AC9
SOFTWARE
HIS B:335 , HIS B:339 , HIS B:345 , HOH B:787
BINDING SITE FOR RESIDUE ZN B 700
10
BC1
SOFTWARE
VAL B:405 , ASN B:408 , PHE B:410 , GLU B:412 , GLU B:415 , ASP B:418
BINDING SITE FOR RESIDUE CA B 701
11
BC2
SOFTWARE
ASP B:469 , MET B:470 , ASP B:472 , ASP B:483 , ARG B:484
BINDING SITE FOR RESIDUE CA B 702
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:199-395,B:199-395)
2: ZINC_PROTEASE (A:332-341,B:332-341)
3: DISINTEGRIN_2 (A:403-488,B:403-488)
4: DISINTEGRIN_1 (A:443-462,B:443-462)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
VM3V1_CROAT
199-395
2
A:199-395
B:199-395
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
VM3V1_CROAT
332-341
2
A:332-341
B:332-341
3
DISINTEGRIN_2
PS50214
Disintegrin domain profile.
VM3V1_CROAT
403-488
2
A:403-488
B:403-488
4
DISINTEGRIN_1
PS00427
Disintegrins signature.
VM3V1_CROAT
443-462
2
A:443-462
B:443-462
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (141 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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