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2ER8
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER DNA DUPLEX
Authors
:
M. X. Fitzgerald, R. Marmorstein
Date
:
24 Oct 05 (Deposition) - 04 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Zn(2)Cys(6) Binuclear Cluster Motif, Transcription Activator/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. X. Fitzgerald, J. R. Rojas, J. M. Kim, G. B. Kohlhaw, R. Marmorstein
Structure Of A Leu3-Dna Complex: Recognition Of Everted Cgg Half-Sites By A Zn2Cys6 Binuclear Cluster Protein.
Structure V. 14 725 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
ZN
8
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:37 , CYS A:57 , CYS A:60 , CYS A:67 , ZN A:105
BINDING SITE FOR RESIDUE ZN A 104
2
AC2
SOFTWARE
CYS A:37 , CYS A:40 , CYS A:47 , CYS A:57 , ZN A:104
BINDING SITE FOR RESIDUE ZN A 105
3
AC3
SOFTWARE
CYS B:37 , CYS B:57 , CYS B:60 , CYS B:67 , ZN B:105
BINDING SITE FOR RESIDUE ZN B 104
4
AC4
SOFTWARE
CYS B:37 , CYS B:40 , CYS B:47 , CYS B:57 , ZN B:104
BINDING SITE FOR RESIDUE ZN B 105
5
AC5
SOFTWARE
CYS C:37 , CYS C:57 , CYS C:60 , CYS C:67 , ZN C:106
BINDING SITE FOR RESIDUE ZN C 105
6
AC6
SOFTWARE
CYS C:37 , CYS C:40 , CYS C:47 , CYS C:57 , ZN C:105
BINDING SITE FOR RESIDUE ZN C 106
7
AC7
SOFTWARE
CYS D:37 , CYS D:57 , CYS D:60 , CYS D:67 , ZN D:108
BINDING SITE FOR RESIDUE ZN D 107
8
AC8
SOFTWARE
CYS D:37 , CYS D:40 , CYS D:47 , CYS D:57 , ZN D:107
BINDING SITE FOR RESIDUE ZN D 108
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ZN2_CY6_FUNGAL_1 (A:36-67,B:36-67,C:36-67,D:36-67)
2: ZN2_CY6_FUNGAL_2 (A:36-69,B:36-69,C:36-69,D:36-69)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZN2_CY6_FUNGAL_1
PS00463
Zn(2)-C6 fungal-type DNA-binding domain signature.
LEUR_YEAST
36-67
4
A:36-67
B:36-67
C:36-67
D:36-67
2
ZN2_CY6_FUNGAL_2
PS50048
Zn(2)-C6 fungal-type DNA-binding domain profile.
LEUR_YEAST
36-69
4
A:36-69
B:36-69
C:36-69
D:36-69
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Exons
(1, 4)
Info
All Exons
Exon 1.1 (A:32-99 | B:33-99 | C:33-96 | D:32...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YLR451W
1
YLR451W.1
XII:1036090-1038750
2661
LEUR_YEAST
1-886
886
4
A:32-99
B:33-99
C:33-96
D:32-99
68
67
64
68
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (69 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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