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2EPP
Asym. Unit
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Asym.Unit (319 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE FIRST C2H2 TYPE ZINC FINGER DOMAIN OF ZINC FINGER PROTEIN 278
Authors
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 07 (Deposition) - 12 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
C2H2, Zinc Finger Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The First C2H2 Type Zinc Finger Domain Of Zinc Finger Protein 278
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:294 , CYS A:297 , HIS A:310 , HIS A:314
BINDING SITE FOR RESIDUE ZN A 201
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: ZINC_FINGER_C2H2_1 (A:294-314|-|-|-|-|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
PATZ1_HUMAN
294-314
357-377
385-405
415-436
444-464
497-518
607-628
1
A:294-314
-
-
-
-
-
-
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Exons
(1, 1)
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All Exons
Exon 1.1a (A:279-344 (gaps))
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2c
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000266269
1a
ENSE00001361762
chr22:
31742218-31740318
1901
PATZ1_HUMAN
1-424
424
1
A:279-344 (gaps)
125
1.2c
ENST00000266269
2c
ENSE00000911167
chr22:
31738946-31738883
64
PATZ1_HUMAN
424-445
22
0
-
-
1.4a
ENST00000266269
4a
ENSE00000653152
chr22:
31731849-31731678
172
PATZ1_HUMAN
446-503
58
0
-
-
1.5a
ENST00000266269
5a
ENSE00001361736
chr22:
31724910-31724773
138
PATZ1_HUMAN
503-549
47
0
-
-
1.6b
ENST00000266269
6b
ENSE00001742345
chr22:
31723295-31721790
1506
PATZ1_HUMAN
549-687
139
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2eppa1 (A:286-338)
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Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
PATZ1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2eppa1
A:286-338
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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