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2EPF
Biol. Unit 5
Info
Asym.Unit (141 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (37 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (36 KB)
Biol.Unit 5 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ZINC-BOUND PSEUDECIN FROM PSEUDECHIS PORPHYRIACUS
Authors
:
N. Suzuki, Y. Yamazaki, Z. Fujimoto, T. Morita, H. Mizuno
Date
:
29 Mar 07 (Deposition) - 11 Mar 08 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Crisp, Snake Venom, Cng Channel, Toxin
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
N. Suzuki, Y. Yamazaki, R. L. Brown, Z. Fujimoto, T. Morita, H. Mizuno
Structures Of Pseudechetoxin And Pseudecin, Two Snake-Venom Cysteine-Rich Secretory Proteins That Target Cyclic Nucleotide-Gated Ion Channels: Implications For Movement Of The C-Terminal Cysteine-Rich Domain
Acta Crystallogr. , Sect. D V. 64 1034 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:51 , HIS A:106 , HOH D:309
BINDING SITE FOR RESIDUE ZN A 301
2
AC2
SOFTWARE
HIS B:51 , HIS B:106 , HOH B:303
BINDING SITE FOR RESIDUE ZN B 302
3
AC3
SOFTWARE
HOH B:304 , HIS C:51 , HIS C:106
BINDING SITE FOR RESIDUE ZN C 303
4
AC4
SOFTWARE
HIS D:51 , HIS D:106 , HOH D:310 , HOH D:328
BINDING SITE FOR RESIDUE ZN D 304
5
AC5
SOFTWARE
HIS A:206 , HOH A:307 , HOH A:308 , PHE C:204 , HIS C:206
BINDING SITE FOR RESIDUE ZN A 305
6
AC6
SOFTWARE
SER A:72 , GLN A:73 , SER A:127 , SER A:128 , HOH A:309 , HOH A:379
BINDING SITE FOR RESIDUE NA A 306
7
AC7
SOFTWARE
SER C:72 , GLN C:73 , SER C:127 , HOH C:308
BINDING SITE FOR RESIDUE NA C 307
8
AC8
SOFTWARE
SER D:72 , GLN D:73 , SER D:127 , HOH D:313
BINDING SITE FOR RESIDUE NA D 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CRISP_1 (A:105-115,B:105-115,C:105-115,D:10...)
2: CRISP_2 (A:131-142,B:131-142,C:131-142,D:13...)
3: SHKT (A:172-205,B:172-205,C:172-205,D:17...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRISP_1
PS01009
CRISP family signature 1.
CRVP_PSEPO
133-143
4
A:105-115
B:105-115
C:105-115
D:105-115
2
CRISP_2
PS01010
CRISP family signature 2.
CRVP_PSEPO
159-170
4
A:131-142
B:131-142
C:131-142
D:131-142
3
SHKT
PS51670
ShKT domain profile.
CRVP_PSEPO
200-233
4
A:172-205
B:172-205
C:172-205
D:172-205
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2epfa1 (A:4-153)
1b: SCOP_d2epfb1 (B:4-153)
1c: SCOP_d2epfc1 (C:4-153)
1d: SCOP_d2epfd1 (D:4-153)
2a: SCOP_d2epfa2 (A:154-210)
2b: SCOP_d2epfb2 (B:154-210)
2c: SCOP_d2epfc2 (C:154-210)
2d: SCOP_d2epfd2 (D:154-210)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
PR-1-like
(14)
Superfamily
:
PR-1-like
(14)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Pseudechis porphyriacus [TaxId: 8671]
(2)
1a
d2epfa1
A:4-153
1b
d2epfb1
B:4-153
1c
d2epfc1
C:4-153
1d
d2epfd1
D:4-153
Class
:
Small proteins
(3458)
Fold
:
Crisp domain-like
(13)
Superfamily
:
Crisp domain-like
(13)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Pseudechis porphyriacus [TaxId: 8671]
(2)
2a
d2epfa2
A:154-210
2b
d2epfb2
B:154-210
2c
d2epfc2
C:154-210
2d
d2epfd2
D:154-210
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2epfA01 (A:4-169)
1b: CATH_2epfB01 (B:4-169)
1c: CATH_2epfC01 (C:4-169)
1d: CATH_2epfD01 (D:4-169)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pathogenesis-related Protein p14a
(12)
Homologous Superfamily
:
Pathogenesis-related Protein p14a
(12)
Red-bellied black snake (Pseudechis porphyriacus)
(2)
1a
2epfA01
A:4-169
1b
2epfB01
B:4-169
1c
2epfC01
C:4-169
1d
2epfD01
D:4-169
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Pfam Domains
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all PFAM domains
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Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
Header - Biol.Unit 2
Biol.Unit 3 (36 KB)
Header - Biol.Unit 3
Biol.Unit 4 (36 KB)
Header - Biol.Unit 4
Biol.Unit 5 (136 KB)
Header - Biol.Unit 5
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