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Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
STRUCTURE OF THE FAMILY II INORGANIC PYROPHOSPHATASE FROM STREPTOCOCCUS AGALACTIAE AT 2.8 RESOLUTION
Authors
:
M. K. Rantanen, L. Lehtio, L. Rajagopal, C. E. Rubens, A. Goldman
Date
:
28 Mar 07 (Deposition) - 29 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Streptococcus Agalactiae, Family Ii, Inorganic, Pyrophosphatase, Signalling, Phosphorylation, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. K. Rantanen, L. Lehtio, L. Rajagopal, C. E. Rubens, A. Goldman
Structure Of The Streptococcus Agalactiae Family Ii Inorganic Pyrophosphatase At 2. 80 A Resolution
Acta Crystallogr. , Sect. D V. 63 738 2007
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: IMIDODIPHOSPHORIC ACID (2PNa)
1b: IMIDODIPHOSPHORIC ACID (2PNb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
4a: TRYPTOPHAN (TRPa)
4b: TRYPTOPHAN (TRPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
2PN
2
Ligand/Ion
IMIDODIPHOSPHORIC ACID
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
MN
4
Ligand/Ion
MANGANESE (II) ION
4
TRP
2
Mod. Amino Acid
TRYPTOPHAN
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:9 , ASP A:13 , ASP A:77 , MN A:402 , 2PN A:1001
BINDING SITE FOR RESIDUE MN A 401
02
AC2
SOFTWARE
ASP A:15 , ASP A:77 , HIS A:99 , ASP A:151 , MN A:401 , 2PN A:1001
BINDING SITE FOR RESIDUE MN A 402
03
AC3
SOFTWARE
ARG A:297 , 2PN A:1001 , HOH A:1099
BINDING SITE FOR RESIDUE MG A 501
04
AC4
SOFTWARE
HIS A:9 , ASP A:77 , HIS A:99 , HIS A:100 , ASP A:151 , LYS A:207 , ARG A:297 , LYS A:298 , MN A:401 , MN A:402 , MG A:501 , HOH A:1085 , HOH A:1099
BINDING SITE FOR RESIDUE 2PN A 1001
05
AC5
SOFTWARE
TRP A:31 , TYR A:94 , GLY A:95 , VAL A:97 , TYR A:112
BINDING SITE FOR RESIDUE TRP A 1031
06
AC6
SOFTWARE
HIS B:9 , ASP B:13 , ASP B:77 , MN B:404 , 2PN B:1002
BINDING SITE FOR RESIDUE MN B 403
07
AC7
SOFTWARE
ASP B:15 , ASP B:77 , HIS B:99 , ASP B:151 , MN B:403 , 2PN B:1002
BINDING SITE FOR RESIDUE MN B 404
08
AC8
SOFTWARE
2PN B:1002
BINDING SITE FOR RESIDUE MG B 502
09
AC9
SOFTWARE
HIS B:9 , ASP B:13 , ASP B:77 , HIS B:99 , HIS B:100 , ASP B:151 , LYS B:207 , ARG B:297 , LYS B:298 , MN B:403 , MN B:404 , MG B:502 , HOH B:2097
BINDING SITE FOR RESIDUE 2PN B 1002
10
BC1
SOFTWARE
TRP B:31 , TYR B:94 , TYR B:112 , MET B:128 , HOH B:2060
BINDING SITE FOR RESIDUE TRP B 2031
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2enxa_ (A:)
1b: SCOP_d2enxb_ (B:)
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(
)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHH phosphoesterases
(11)
Superfamily
:
DHH phosphoesterases
(11)
Family
:
Manganese-dependent inorganic pyrophosphatase (family II)
(9)
Protein domain
:
automated matches
(1)
Streptococcus agalactiae [TaxId: 205921]
(1)
1a
d2enxa_
A:
1b
d2enxb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2enxA01 (A:2-191)
1b: CATH_2enxB01 (B:2-191)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
inorganic pyrophosphatase (n-terminal core)
(10)
Homologous Superfamily
:
inorganic pyrophosphatase (n-terminal core)
(10)
Streptococcus agalactiae a909. Organism_taxid: 205921. Strain: a909.
(1)
1a
2enxA01
A:2-191
1b
2enxB01
B:2-191
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Pfam Domains
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Asym.Unit (102 KB)
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