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2ENO
Asym. Unit
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Asym.Unit (591 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN SYNAPTOJANIN 2 BINDING PROTEIN
Authors
:
H. Endo, M. Yoshida, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
28 Mar 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Mitochondrial Outer Membrane Protein 25, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endocytosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
H. Endo, M. Yoshida, F. Hayashi, S. Yokoyama
Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_051394 (V16I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051394
V
9
I
SYJ2B_HUMAN
Polymorphism
4356408
A
V
16
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:20-107)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SYJ2B_HUMAN
13-100
1
A:20-107
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:8-29)
Exon 1.2 (A:29-74)
Exon 1.3 (A:75-106)
Exon 1.4 (A:107-120 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000256366
1
ENSE00000807865
chr14:
70883807-70883617
191
SYJ2B_HUMAN
1-22
22
1
A:8-29
22
1.2
ENST00000256366
2
ENSE00000658851
chr14:
70855323-70855187
137
SYJ2B_HUMAN
22-67
46
1
A:29-74
46
1.3
ENST00000256366
3
ENSE00000658850
chr14:
70842488-70842393
96
SYJ2B_HUMAN
68-99
32
1
A:75-106
32
1.4
ENST00000256366
4
ENSE00000807864
chr14:
70839848-70833217
6632
SYJ2B_HUMAN
100-145
46
1
A:107-120 (gaps)
18
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2enoa_ (A:)
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Protein Domains
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)
(
)
Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2enoa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2enoA00 (A:1-120)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2enoA00
A:1-120
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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