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2EMO
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Authors
:
G. Palm, A. Zdanov, A. Wlodawer
Date
:
31 Mar 97 (Deposition) - 20 Aug 97 (Release) - 19 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Fluorescent Protein, Beta-Barrel, Bioluminescence, Luminescence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Palm, A. Zdanov, G. A. Gaitanaris, R. Stauber, G. N. Pavlakis, A. Wlodawer
The Structural Basis For Spectral Variations In Green Fluorescent Protein.
Nat. Struct. Biol. V. 4 361 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: [2-(2-HYDROXY-1-METHYL-ETHYL)-4-(1... (CSHa)
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Label:
No.
Name
Count
Type
Full Name
1
CSH
1
Mod. Amino Acid
[2-(2-HYDROXY-1-METHYL-ETHYL)-4-(1H-IMIDAZOL-4-YLMETHYL)-5-OXO-IMIDAZOLIDIN-1-YL]-ACETIC ACID
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Sites
(1, 1)
Info
All Sites
1: CSH (AUTHOR)
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Label:
No.
Name
Evidence
Residues
Description
1
CSH
AUTHOR
CSH A:66
THE CHROMOPHORE (CSH) IS FORMED FROM SER 65 - TYR 66 - GLY 67 BY CYCLIZATION OF THE POLYPEPTIDE BACKBONE BETWEEN NITROGEN OF GLY 67 AND CARBONYL CARBON OF SER 65. SUBSEQUENTLY THE CARBONYL OXYGEN IS ELIMINATED AS WATER AND TYR 66 IS OXIDIZED TO DEHYDROTYROSINE.
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F100Y, chain A, )
2: VAR_GFP_AEQVI_002 (T108S, chain A, )
3: VAR_GFP_AEQVI_003 (L141M, chain A, )
4: VAR_GFP_AEQVI_004 (V219I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A
F
100
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A
T
108
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A
L
141
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A
V
219
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2emoa_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d2emoa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2emoA00 (A:6-229)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Green Fluorescent Protein
(102)
Homologous Superfamily
:
Green Fluorescent Protein
(102)
Aequorea victoria. Organism_taxid: 6100.
(30)
1a
2emoA00
A:6-229
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (38 KB)
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