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2EL9
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (127 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI HISTIDYL-TRNA SYNTHETASE COMPLEXED WITH A HISTIDYL-ADENYLATE ANALOGUE
Authors
:
T. Yanagisawa, S. Y. Si, M. Matsuno, R. Ishii, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
27 Mar 07 (Deposition) - 18 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Trna, Aminoacyl-Trna Synthetase, Translation, Histidyl-Trna Synthetase, Aminoacyladenylate Analog, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yanagisawa, S. Y. Si, M. Matsuno, R. Ishii, S. Yokoyama
Crystal Structure Of E. Coli Histidyl-Trna Synthetase Complexed With A Histidyl-Adenylate Analogue
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 5'-O-[(L-HISTIDYLAMINO)SULFONYL]AD... (HSSa)
1b: 5'-O-[(L-HISTIDYLAMINO)SULFONYL]AD... (HSSb)
1c: 5'-O-[(L-HISTIDYLAMINO)SULFONYL]AD... (HSSc)
1d: 5'-O-[(L-HISTIDYLAMINO)SULFONYL]AD... (HSSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HSS
4
Ligand/Ion
5'-O-[(L-HISTIDYLAMINO)SULFONYL]ADENOSINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:83 , THR A:85 , ARG A:113 , GLU A:115 , GLY A:120 , ARG A:121 , TYR A:122 , PHE A:125 , GLN A:127 , GLU A:131 , ARG A:259 , TYR A:263 , TYR A:264 , THR A:281 , ALA A:284 , TYR A:288 , GLY A:304 , PHE A:305 , ALA A:306 , GLY A:308 , ARG A:311
BINDING SITE FOR RESIDUE HSS A 510
2
AC2
SOFTWARE
GLU B:83 , THR B:85 , ARG B:113 , GLU B:115 , GLY B:120 , ARG B:121 , TYR B:122 , PHE B:125 , GLN B:127 , GLU B:131 , ARG B:259 , TYR B:263 , TYR B:264 , THR B:281 , TYR B:288 , GLY B:304 , PHE B:305 , ALA B:306 , GLY B:308 , ARG B:311 , HOH B:611 , HOH B:620
BINDING SITE FOR RESIDUE HSS B 610
3
AC3
SOFTWARE
GLU C:83 , THR C:85 , ARG C:113 , GLU C:115 , GLY C:120 , ARG C:121 , TYR C:122 , PHE C:125 , GLN C:127 , GLU C:131 , ARG C:259 , TYR C:263 , TYR C:264 , THR C:281 , ALA C:284 , GLY C:285 , TYR C:288 , GLY C:304 , PHE C:305 , ALA C:306 , GLY C:308 , ARG C:311
BINDING SITE FOR RESIDUE HSS C 710
4
AC4
SOFTWARE
GLU D:83 , THR D:85 , ARG D:113 , GLU D:115 , GLY D:120 , ARG D:121 , TYR D:122 , PHE D:125 , GLN D:127 , GLU D:131 , ARG D:259 , LEU D:261 , TYR D:263 , TYR D:264 , THR D:281 , ALA D:284 , TYR D:288 , GLY D:304 , PHE D:305 , ALA D:306 , GLY D:308 , ARG D:311 , HOH D:811 , HOH D:820 , HOH D:844
BINDING SITE FOR RESIDUE HSS D 810
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2el9a2 (A:3-325)
1b: SCOP_d2el9b2 (B:4-325)
1c: SCOP_d2el9c2 (C:3-325)
1d: SCOP_d2el9d2 (D:4-325)
2a: SCOP_d2el9a1 (A:326-424)
2b: SCOP_d2el9b1 (B:326-424)
2c: SCOP_d2el9c1 (C:326-424)
2d: SCOP_d2el9d1 (D:326-424)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Histidyl-tRNA synthetase (HisRS)
(9)
Escherichia coli [TaxId: 562]
(4)
1a
d2el9a2
A:3-325
1b
d2el9b2
B:4-325
1c
d2el9c2
C:3-325
1d
d2el9d2
D:4-325
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
Class II aaRS ABD-related
(40)
Family
:
Anticodon-binding domain of Class II aaRS
(33)
Protein domain
:
Histidyl-tRNA synthetase (HisRS), C-terminal domain
(9)
Escherichia coli [TaxId: 562]
(4)
2a
d2el9a1
A:326-424
2b
d2el9b1
B:326-424
2c
d2el9c1
C:326-424
2d
d2el9d1
D:326-424
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2el9D01 (D:4-325)
1b: CATH_2el9B01 (B:4-325)
1c: CATH_2el9A01 (A:3-325)
1d: CATH_2el9C01 (C:3-325)
2a: CATH_2el9A02 (A:326-422)
2b: CATH_2el9B02 (B:326-422)
2c: CATH_2el9C02 (C:326-422)
2d: CATH_2el9D02 (D:326-422)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Escherichia coli. Organism_taxid: 562. Strain: mc4100.
(1)
1a
2el9D01
D:4-325
1b
2el9B01
B:4-325
1c
2el9A01
A:3-325
1d
2el9C01
C:3-325
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Escherichia coli. Organism_taxid: 562. Strain: mc4100.
(1)
2a
2el9A02
A:326-422
2b
2el9B02
B:326-422
2c
2el9C02
C:326-422
2d
2el9D02
D:326-422
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (254 KB)
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