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2EJF
Biol. Unit 1
Info
Asym.Unit (109 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BIOTIN PROTEIN LIGASE (MUTATIONS R48A AND K111A) AND BIOTIN CARBOXYL CARRIER PROTEIN COMPLEX FROM PYROCOCCUS HORIKOSHII OT3
Authors
:
B. Bagautdinov, Y. Matsuura, S. Bagautdinova, N. Kunishima, Riken St Genomics/Proteomics Initiative (Rsgi)
Date
:
16 Mar 07 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Biotinylation, Dimer, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
B. Bagautdinov, Y. Matsuura, S. Bagautdinova, N. Kunishima
Protein Biotinylation Visualized By A Complex Structure Of Biotin Protein Ligase With A Substrate
J. Biol. Chem. V. 283 14739 2008
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ADENOSINE (ADNa)
1b: ADENOSINE (ADNb)
2a: BIOTIN (BTNa)
2b: BIOTIN (BTNb)
2c: BIOTIN (BTNc)
3a: GLYCEROL (GOLa)
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Label:
No.
Name
Count
Type
Full Name
1
ADN
1
Ligand/Ion
ADENOSINE
2
BTN
2
Ligand/Ion
BIOTIN
3
GOL
-1
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:210 , ARG A:212 , TYR A:227 , ASP B:184 , MET C:114 , LYS C:115
BINDING SITE FOR RESIDUE BTN C 1400
2
AC2
SOFTWARE
SER A:21 , THR A:22 , ASN A:23 , GLN A:42 , GLY A:45 , HIS A:46 , GLY A:47 , ALA A:48 , TRP A:53 , LEU A:62 , ASN A:103 , ASP A:104 , GLY A:114 , ILE A:128 , GLY A:129
BINDING SITE FOR RESIDUE BTN A 1401
3
AC4
SOFTWARE
ARG A:51 , LYS A:52 , TRP A:53 , GLU A:54 , ASN A:131 , PRO A:137 , ALA A:140
BINDING SITE FOR RESIDUE ADN A 2001
4
AC6
SOFTWARE
GLN A:17 , GLU A:18 , ARG B:11 , ARG B:12 , GLU B:32
BINDING SITE FOR RESIDUE GOL B 3001
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ejfa1 (A:189-235)
1b: SCOP_d2ejfb1 (B:189-231)
2a: SCOP_d2ejfa2 (A:1-188)
2b: SCOP_d2ejfb2 (B:1-188)
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
C-terminal domain of transcriptional repressors
(56)
Family
:
Biotin repressor (BirA)
(30)
Protein domain
:
Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain
(26)
Pyrococcus horikoshii [TaxId: 53953]
(26)
1a
d2ejfa1
A:189-235
1b
d2ejfb1
B:189-231
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Biotin holoenzyme synthetase
(30)
Protein domain
:
Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain
(26)
Pyrococcus horikoshii [TaxId: 53953]
(26)
2a
d2ejfa2
A:1-188
2b
d2ejfb2
B:1-188
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ejfC00 (C:81-149)
1b: CATH_2ejfD00 (D:81-149)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Pyrococcus horikoshii ot3. Organism_taxid: 70601. Strain: ot3.
(4)
1a
2ejfC00
C:81-149
1b
2ejfD00
D:81-149
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (109 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
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