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2EIY
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (319 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF T.TH.HB8 BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE COMPLEXED WITH 4-METHYLVALERIC ACID
Authors
:
M. Goto
Date
:
14 Mar 07 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Plp-Dependent Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goto
Crystal Structure Of T. Th. Hb8 Branched-Chain Amino Acid Aminotransferase Complexed With 4-Methylvaleric Acid
To Be Published
[
close entry info
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: 4-METHYL VALERIC ACID (4MVa)
1b: 4-METHYL VALERIC ACID (4MVb)
1c: 4-METHYL VALERIC ACID (4MVc)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MV
6
Ligand/Ion
4-METHYL VALERIC ACID
2
MPD
10
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PLP
6
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:59 , ARG A:148 , LYS A:159 , TYR A:164 , GLU A:193 , GLY A:196 , GLU A:197 , LEU A:216 , GLY A:218 , ILE A:219 , THR A:220 , GLY A:255 , THR A:256 , HOH A:2420 , HOH A:2443
BINDING SITE FOR RESIDUE PLP A 413
02
AC2
SOFTWARE
ARG B:59 , LYS B:159 , TYR B:164 , GLU B:193 , GLY B:196 , GLU B:197 , LEU B:216 , GLY B:218 , ILE B:219 , THR B:220 , GLY B:255 , THR B:256 , HOH B:926 , HOH B:944
BINDING SITE FOR RESIDUE PLP B 913
03
AC3
SOFTWARE
ARG C:59 , ARG C:148 , LYS C:159 , TYR C:164 , GLU C:193 , GLY C:196 , LEU C:216 , GLY C:218 , ILE C:219 , THR C:220 , GLY C:255 , THR C:256 , HOH C:1423 , HOH C:1466
BINDING SITE FOR RESIDUE PLP C 1413
04
AC4
SOFTWARE
TYR A:95 , GLY A:196 , THR A:256 , ALA A:257 , HOH A:2456 , TYR C:31
BINDING SITE FOR RESIDUE 4MV A 2414
05
AC5
SOFTWARE
TYR B:31 , GLY B:38 , TYR B:95 , GLY B:196 , THR B:256 , ALA B:257 , HOH B:962
BINDING SITE FOR RESIDUE 4MV B 914
06
AC6
SOFTWARE
GLY C:38 , TYR C:95 , THR C:256 , ALA C:257 , HOH C:1464
BINDING SITE FOR RESIDUE 4MV C 1414
07
AC7
SOFTWARE
ASP A:230 , GLU A:297 , HOH A:2483 , GLU C:289 , ARG C:294 , ARG C:295 , HOH C:1639
BINDING SITE FOR RESIDUE MPD A 2416
08
AC8
SOFTWARE
ARG A:52 , GLU A:55 , GLU A:217 , ILE A:219 , ASP A:222 , HOH A:2473 , ARG C:203 , ASP C:204
BINDING SITE FOR RESIDUE MPD A 2417
09
AC9
SOFTWARE
TYR B:95 , LEU B:107 , TRP B:124 , TRP B:126
BINDING SITE FOR RESIDUE MPD B 915
10
BC1
SOFTWARE
ARG A:203 , ASP A:204 , ARG B:52 , GLU B:55 , GLU B:217 , GLY B:218 , ASP B:222 , HOH B:975
BINDING SITE FOR RESIDUE MPD B 917
11
BC2
SOFTWARE
ARG B:203 , ASP B:204 , ARG C:52 , GLU C:55 , GLU C:217 , ILE C:219 , ASP C:222 , HOH C:1481
BINDING SITE FOR RESIDUE MPD C 1416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2eiya_ (A:)
1b: SCOP_d2eiyb_ (B:)
1c: SCOP_d2eiyc_ (C:)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Thermus thermophilus HB8 [TaxId: 300852]
(4)
1a
d2eiya_
A:
1b
d2eiyb_
B:
1c
d2eiyc_
C:
[
close SCOP info
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2eiyB01 (B:5-130)
1b: CATH_2eiyA01 (A:5-126)
1c: CATH_2eiyC01 (C:5-126)
2a: CATH_2eiyB02 (B:131-294)
2b: CATH_2eiyA02 (A:135-294)
2c: CATH_2eiyC02 (C:137-294)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(4)
1a
2eiyB01
B:5-130
1b
2eiyA01
A:5-126
1c
2eiyC01
C:5-126
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(4)
2a
2eiyB02
B:131-294
2b
2eiyA02
A:135-294
2c
2eiyC02
C:137-294
[
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Pfam Domains
(0, 0)
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all PFAM domains
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (167 KB)
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Header - Biol.Unit 1
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