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2EIT
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (187 KB)
Biol.Unit 2 (554 KB)
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(1)
Title
:
CRYSTAL ANALYSIS OF DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS THERMOPHILUS WITH BOUND L-ALANINE AND NAD
Authors
:
E. Inagaki, K. Sakamoto, S. Yokoyama, Riken Structural Genomics/Pr Initiative (Rsgi)
Date
:
13 Mar 07 (Deposition) - 18 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Keywords
:
Enzyme-Coenzyme-Inhibitor Ternary Complex, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Inagaki, N. Ohshima, K. Sakamoto, S. Yokoyama, T. H. Tahirov
Crystal Structure Analysis Of Delta1-Pyrroline-5-Carboxylat Dehydrogenase In Ternary Complex With Inhibitor And Nad
To Be Published
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: ALANINE (ALAa)
2b: ALANINE (ALAb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
ALA
2
Mod. Amino Acid
ALANINE
3
MPD
9
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:249 , ILE A:268 , ALA A:271 , NAD A:1518
BINDING SITE FOR RESIDUE ACT A 1519
02
AC2
SOFTWARE
ARG A:462 , PHE A:464 , HIS A:465 , HOH A:2755 , HOH A:2970 , LYS B:510
BINDING SITE FOR RESIDUE ACT A 1520
03
AC3
SOFTWARE
SER A:55 , LEU A:56 , GLU A:123 , ASP A:211 , HOH A:2612 , HOH A:2692
BINDING SITE FOR RESIDUE NA A 1521
04
AC4
SOFTWARE
ALA B:245 , GLU B:249 , LYS B:267 , ILE B:268 , ALA B:271 , NAD B:2518
BINDING SITE FOR RESIDUE ACT B 2519
05
AC5
SOFTWARE
LYS A:510 , ARG B:462 , PHE B:464 , HIS B:465 , HOH B:2773 , HOH B:2920
BINDING SITE FOR RESIDUE ACT B 2520
06
AC6
SOFTWARE
SER B:55 , LEU B:56 , GLU B:123 , ASP B:211 , HOH B:2601 , HOH B:2812
BINDING SITE FOR RESIDUE NA B 2521
07
AC7
SOFTWARE
CYS A:322 , SER A:323 , GLY A:477 , ALA A:478 , PHE A:485 , HOH A:2543 , HOH A:2592 , HOH A:2789 , HOH A:2839 , HOH A:2997
BINDING SITE FOR RESIDUE ALA A 1517
08
AC8
SOFTWARE
ILE A:180 , ALA A:181 , PRO A:182 , TRP A:183 , ASN A:184 , ILE A:189 , LYS A:207 , ALA A:209 , GLU A:210 , GLY A:240 , GLY A:244 , ALA A:245 , PHE A:258 , THR A:259 , GLY A:260 , SER A:261 , VAL A:264 , GLU A:288 , THR A:289 , GLY A:290 , CYS A:322 , GLU A:417 , PHE A:419 , PHE A:485 , ACT A:1519 , HOH A:2723 , HOH A:2772 , HOH A:2792 , HOH A:2997
BINDING SITE FOR RESIDUE NAD A 1518
09
AC9
SOFTWARE
CYS B:322 , SER B:323 , GLY B:477 , ALA B:478 , PHE B:485 , HOH B:2543 , HOH B:2623 , HOH B:2907
BINDING SITE FOR RESIDUE ALA B 2517
10
BC1
SOFTWARE
ILE B:180 , ALA B:181 , PRO B:182 , TRP B:183 , ASN B:184 , ILE B:189 , LYS B:207 , ALA B:209 , GLU B:210 , GLY B:240 , GLY B:244 , ALA B:245 , PHE B:258 , THR B:259 , GLY B:260 , SER B:261 , VAL B:264 , GLU B:288 , THR B:289 , GLY B:290 , CYS B:322 , GLU B:417 , PHE B:419 , PHE B:485 , ACT B:2519 , HOH B:2704 , HOH B:2723 , HOH B:2765 , HOH B:2922 , HOH B:2972 , HOH B:2974
BINDING SITE FOR RESIDUE NAD B 2518
11
BC2
SOFTWARE
GLU A:158 , HOH A:2628 , HOH A:2663 , HOH A:2875 , PHE B:6 , TYR B:144 , ALA B:148 , HOH B:2580
BINDING SITE FOR RESIDUE MPD A 1530
12
BC3
SOFTWARE
ASP A:359 , HOH A:2623
BINDING SITE FOR RESIDUE MPD A 1531
13
BC4
SOFTWARE
ARG A:151 , TYR A:152 , LEU A:500 , HOH A:2863 , HOH A:2864 , MPD B:2534
BINDING SITE FOR RESIDUE MPD A 1533
14
BC5
SOFTWARE
PHE A:6 , TYR A:144 , ALA A:148 , LEU A:500 , HOH A:2593 , HOH A:2621 , HOH A:2670 , GLU B:158 , VAL B:160 , HOH B:2852
BINDING SITE FOR RESIDUE MPD A 2530
15
BC6
SOFTWARE
ARG B:36 , GLU B:221 , HOH B:2745 , HOH B:2909
BINDING SITE FOR RESIDUE MPD B 2531
16
BC7
SOFTWARE
LEU A:27 , ARG A:28 , TYR A:122 , GLU A:355 , PRO B:353 , GLU B:355 , GLU B:356 , HOH B:2687
BINDING SITE FOR RESIDUE MPD B 2532
17
BC8
SOFTWARE
GLN B:279 , HOH B:2631 , HOH B:2822
BINDING SITE FOR RESIDUE MPD B 2533
18
BC9
SOFTWARE
MPD A:1533 , TYR B:171 , HOH B:2827 , HOH B:2908
BINDING SITE FOR RESIDUE MPD B 2534
19
CC1
SOFTWARE
LEU A:275 , GLN A:279 , HOH A:2708
BINDING SITE FOR RESIDUE MPD A 2535
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2eita_ (A:)
1b: SCOP_d2eitb_ (B:)
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Classes
(
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
automated matches
(24)
Thermus thermophilus HB8 [TaxId: 300852]
(15)
1a
d2eita_
A:
1b
d2eitb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2eitA01 (A:1-289,A:480-516)
1b: CATH_2eitB01 (B:1-289,B:480-516)
2a: CATH_2eitA02 (A:290-479)
2b: CATH_2eitB02 (B:290-479)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(9)
1a
2eitA01
A:1-289,A:480-516
1b
2eitB01
B:1-289,B:480-516
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(9)
2a
2eitA02
A:290-479
2b
2eitB02
B:290-479
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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