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2EI2
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (419 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE FROM PSEUDOMONAS SP. STAIN C18
Authors
:
D. B. Neau, M. S. Kelker, C. L. Colbert, J. T. Bolin
Date
:
10 Mar 07 (Deposition) - 19 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A
Biol. Unit 1: A (8x)
Keywords
:
Extradiol Dioxygenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, M. S. Kelker, H. Maaroufi, C. L. Colbert, L. D. Eltis, J. T. Bolin
Structural Explanation For Success And Failure In The Enzymatic Ring-Cleavage Of 3, 4 Dihydroxybiphenyl And Relate Pcb Metabolites
To Be Published
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:177 , HOH A:905 , HOH A:906 , HOH A:907 , HOH A:908 , HOH A:932
BINDING SITE FOR RESIDUE MG A 398
2
AC2
SOFTWARE
HIS A:152 , HIS A:215 , TYR A:256 , GLU A:266 , HOH A:903 , HOH A:904
BINDING SITE FOR RESIDUE FE2 A 399
3
AC3
SOFTWARE
TYR A:12 , TRP A:51 , HIS A:52 , HIS A:53 , ARG A:103 , MET A:104 , PRO A:125 , ARG A:126
BINDING SITE FOR RESIDUE GOL A 901
4
AC4
SOFTWARE
PHE A:192 , HIS A:247 , TYR A:256 , LEU A:297 , HOH A:904 , HOH A:1143
BINDING SITE FOR RESIDUE GOL A 902
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 3)
Info
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1: VOC (A:9-124|A:149-270)
2: EXTRADIOL_DIOXYGENAS (A:245-266)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
NAHC_PSEU8
9-124
149-270
2
A:9-124
A:149-270
2
EXTRADIOL_DIOXYGENAS
PS00082
Extradiol ring-cleavage dioxygenases signature.
NAHC_PSEU8
245-266
1
A:245-266
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ei2a1 (A:4-137)
1b: SCOP_d2ei2a2 (A:138-302)
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Protein Domains
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Organisms
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)
(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
automated matches
(34)
Protein domain
:
automated matches
(34)
Pseudomonas sp. [TaxId: 69011]
(5)
1a
d2ei2a1
A:4-137
1b
d2ei2a2
A:138-302
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CATH Domains
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Chain A
Asymmetric Unit 1
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