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2EHA
Biol. Unit 2
Info
Asym.Unit (212 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GOAT LACTOPEROXIDASE COMPLEXED WITH FORMATE ANION AT 3.3 A RESOLUTION
Authors
:
A. K. Singh, A. S. Ethayathulla, N. Singh, S. Sharma, P. Kaur, T. P. Singh
Date
:
06 Mar 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Anti-Microbail, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Singh, A. S. Ethayathulla, N. Singh, S. Sharma, A. Bhushan, P. Kaur, T. P. Singh
Crystal Structure Of Goat Lactoperoxidase Complexed With Formate Anion At 3. 3 A Resolution
To Be Published
[
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
4a: FORMIC ACID (FMTa)
4b: FORMIC ACID (FMTb)
4c: FORMIC ACID (FMTc)
4d: FORMIC ACID (FMTd)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6a: ALPHA-D-MANNOSE (MANa)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8a: 1-(OXIDOSULFANYL)METHANAMINE (OSMa)
9a: THIOCYANATE ION (SCNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CO3
1
Ligand/Ion
CARBONATE ION
4
FMT
2
Ligand/Ion
FORMIC ACID
5
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
OSM
1
Ligand/Ion
1-(OXIDOSULFANYL)METHANAMINE
9
SCN
-1
Ligand/Ion
THIOCYANATE ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC6 (SOFTWARE)
17: CC8 (SOFTWARE)
18: DC2 (SOFTWARE)
19: DC3 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASN A:205 , LEU A:210 , LEU A:212 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600 , LEU B:206
BINDING SITE FOR RESIDUE NAG A 599
02
AC5
SOFTWARE
TRP A:220 , NAG A:599 , MAN A:601 , ARG B:204 , LEU B:206 , SER B:207
BINDING SITE FOR RESIDUE NAG A 600
03
AC7
SOFTWARE
ASN A:241 , ALA A:244 , LYS A:388 , NAG A:603 , PHE B:70
BINDING SITE FOR RESIDUE NAG A 602
04
AC8
SOFTWARE
NAG A:602 , BMA A:604 , LYS B:485
BINDING SITE FOR RESIDUE NAG A 603
05
BC3
SOFTWARE
ASN B:95 , ARG B:96 , ILE B:315 , ARG B:504 , GLN B:568 , NAG B:597 , CO3 B:1002
BINDING SITE FOR RESIDUE NAG B 596
06
BC4
SOFTWARE
PRO B:314 , ILE B:315 , NAG B:596 , MAN B:598
BINDING SITE FOR RESIDUE NAG B 597
07
BC5
SOFTWARE
NAG B:597
BINDING SITE FOR RESIDUE MAN B 598
08
BC6
SOFTWARE
ASN B:205 , SER B:208 , ALA B:214 , VAL B:215 , GLN B:217 , NAG B:600
BINDING SITE FOR RESIDUE NAG B 599
09
BC7
SOFTWARE
TRP B:220 , NAG B:599 , BMA B:601
BINDING SITE FOR RESIDUE NAG B 600
10
BC8
SOFTWARE
NAG B:600
BINDING SITE FOR RESIDUE BMA B 601
11
BC9
SOFTWARE
PHE A:70 , ASN B:241 , ALA B:244 , TRP B:384 , LYS B:388 , NAG B:603
BINDING SITE FOR RESIDUE NAG B 602
12
CC1
SOFTWARE
LYS A:485 , NAG B:602 , BMA B:604
BINDING SITE FOR RESIDUE NAG B 603
13
CC2
SOFTWARE
NAG B:603
BINDING SITE FOR RESIDUE BMA B 604
14
CC3
SOFTWARE
ASN B:332 , VAL B:335 , NAG B:606
BINDING SITE FOR RESIDUE NAG B 605
15
CC4
SOFTWARE
NAG B:605
BINDING SITE FOR RESIDUE NAG B 606
16
CC6
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
BINDING SITE FOR RESIDUE CA B 607
17
CC8
SOFTWARE
ASN B:95 , ARG B:96 , ARG B:504 , ARG B:506 , NAG B:596
BINDING SITE FOR RESIDUE CO3 B 1002
18
DC2
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , ARG B:255 , GLU B:258 , GLN B:259 , TYR B:312 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , VAL B:354 , PHE B:380 , LEU B:417 , ILE B:436 , ARG B:440 , OSM B:3021
BINDING SITE FOR RESIDUE HEM B 1003
19
DC3
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , HEM B:1003
BINDING SITE FOR RESIDUE OSM B 3021
20
DC6
SOFTWARE
ARG B:397 , HIS B:558 , ILE B:559 , THR B:560 , LYS B:561
BINDING SITE FOR RESIDUE FMT B 2003
21
DC7
SOFTWARE
ALA B:44 , TRP B:46 , LEU B:47 , SER B:340 , ASN B:341 , VAL B:342 , TRP B:452
BINDING SITE FOR RESIDUE FMT B 2004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (212 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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