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2EGQ
Asym. Unit
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Asym.Unit (385 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FOURTH LIM DOMAIN FROM HUMAN FOUR AND A HALF LIM DOMAINS 1
Authors
:
K. Inoue, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
01 Mar 07 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Four And A Half Lim Domains Protein 1, Fhl-1, Skeletal Muscle Lim- Protein 1, Slim 1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Inoue, F. Hayashi, S. Yokoyama
Solution Structure Of The Fourth Lim Domain From Human Four And A Half Lim Domains 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:43 , CYS A:46
BINDING SITE FOR RESIDUE ZN A 200
2
AC2
SOFTWARE
CYS A:49 , CYS A:52 , CYS A:70 , CYS A:73
BINDING SITE FOR RESIDUE ZN A 300
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_046000 (C21F, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046000
C
132
F
FHL1_HUMAN
Disease (RBM)
---
A
C
21
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_1 (A:9-12|A:18-25|A:32-56)
2: LIM_DOMAIN_2 (A:17-31|A:9-16|A:32-75)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
FHL1_HUMAN
40-75
101-136
162-195
3
A:9-12
A:18-25
A:32-56
2
LIM_DOMAIN_2
PS50023
LIM domain profile.
FHL1_HUMAN
99-160
38-98
161-219
3
A:17-31
A:9-16
A:32-75
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Exons
(4, 4)
Info
All Exons
Exon 1.10a (A:1-9 (gaps))
Exon 1.11a (A:10-20 (gaps))
Exon 1.12c (A:21-31 (gaps))
Exon 1.13d (A:32-77)
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All Exon Boundaries
1: Boundary 1.7b/1.10a
2: Boundary 1.10a/1.11a
3: Boundary 1.11a/1.12c
4: Boundary 1.12c/1.13d
5: Boundary 1.13d/1.14
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000394155
1b
ENSE00001453320
X:135229680-135229787
108
FHL1_HUMAN
-
0
0
-
-
1.7b
ENST00000394155
7b
ENSE00001029114
X:135252066-135252139
74
FHL1_HUMAN
-
0
0
-
-
1.10a
ENST00000394155
10a
ENSE00002182486
X:135288566-135288747
182
FHL1_HUMAN
1-52
52
1
A:1-9 (gaps)
28
1.11a
ENST00000394155
11a
ENSE00000890595
X:135289175-135289349
175
FHL1_HUMAN
53-111
59
1
A:10-20 (gaps)
48
1.12c
ENST00000394155
12c
ENSE00000890598
X:135289951-135290120
170
FHL1_HUMAN
111-167
57
1
A:21-31 (gaps)
14
1.13d
ENST00000394155
13d
ENSE00000676980
X:135290614-135290800
187
FHL1_HUMAN
168-230
63
1
A:32-77
46
1.14
ENST00000394155
14
ENSE00000676981
X:135291402-135291601
200
FHL1_HUMAN
230-296
67
0
-
-
1.15c
ENST00000394155
15c
ENSE00001707082
X:135292030-135293508
1479
FHL1_HUMAN
297-323
27
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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